SMTL ID : 3ch8.1

The crystal structure of PDZ-Fibronectin fusion protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x PRO- GLN- PRO- VAL- ASP- SER- TRP- VAL: C-terminal octapeptide from protein ARVCF(Non-covalent)

PRO-GLN-PRO-VAL-ASP-SER-TRP-VAL.1: 23 residues within 4Å: Chain A: E.4, L.5, G.6, F.7, S.8, I.9, S.10, R.16, R.31, Q.33, H.61, V.65, L.68, K.69, V.104, R.137, H.179, N.181, Y.182, H.183, Y.184, Y.185, S.186 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:F.7, A:R.31, A:Q.33, A:L.68, A:L.68, A:V.104, A:Y.182, A:H.183, A:Y.184, A:Y.185 Hydrogen bonds: A:L.5, A:G.6, A:F.7, A:F.7, A:S.8, A:S.8, A:I.9, A:I.9, A:R.16, A:R.16, A:R.31, A:K.69, A:H.183, A:Y.184, A:Y.184, A:S.186, A:S.186 Water bridges: A:G.11, A:R.137

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, J. et al., Structural basis for exquisite specificity of affinity clamps, synthetic binding proteins generated through directed domain-interface evolution. J.Mol.Biol. (2009)

Release Date

2009-03-31

Peptides

fusion protein PDZ-Fibronectin,Fibronectin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

fusion protein PDZ-Fibronectin,Fibronectin