SMTL ID : 3chv.1

CRYSTAL STRUCTURE OF a prokaryotic domain of unknown function (DUF849) member (SPOA0042) FROM SILICIBACTER POMEROYI DSS-3 AT 1.45 A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: H.77, N.284 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.77, A:N.284, H2O.6, H2O.9 ZN.2: 3 residues within 4Å: Chain A: H.52, H.54, E.234 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.52, A:H.54, A:E.234, A:E.234, H2O.11 ZN.5: 2 residues within 4Å: Chain B: H.77, N.284 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.77, B:N.284, H2O.20, H2O.23 ZN.6: 3 residues within 4Å: Chain B: H.52, H.54, E.234 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.52, B:H.54, B:E.234, B:E.234, H2O.25

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: F.119, P.120, S.121, R.122 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: A.250, R.253 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain B: F.119, P.120, S.121, R.122 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain B: A.250, R.253 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of prokaryotic domain of unknown function (DUF849) with a TIM barrel fold (YP_164873.1) from Silicibacter pomeroyi DSS-3 at 1.45 A resolution. To be published

Release Date

2008-04-01

Peptides

Prokaryotic domain of unknown function (DUF849) with a TIM barrel fold: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Prokaryotic domain of unknown function (DUF849) with a TIM barrel fold