SMTL ID : 3cig.1

Crystal structure of mouse TLR3 ectodomain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.66 Å

Oligo State

monomer

Ligands

2 x NAG- NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NDG.1: 5 residues within 4Å: Chain A: R.174, A.199, N.226, Q.252, Y.276 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.226, A:Q.252 Water bridges: A:R.174 Hydrophobic interactions: A:Y.276 NAG-NDG.4: 2 residues within 4Å: Chain A: N.372, E.373 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.372

1 x NAG- NAG- FUL: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-FUL.2: 4 residues within 4Å: Chain A: N.221, T.222, W.247, N.249 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 5 residues within 4Å: Chain A: V.263, N.265, S.288, R.290 Ligands: FUC.10 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 2 residues within 4Å: Chain A: S.455, N.481 No protein-ligand interaction detected (PLIP)

1 x NAG- NDG- MAN- BMA- MAN: beta-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NDG-MAN-BMA-MAN.5: 5 residues within 4Å: Chain A: S.361, N.387, T.389, K.390, D.411 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.387, A:T.389, A:D.411

1 x NAG- NDG- BMA- FUL: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NDG-BMA-FUL.6: 3 residues within 4Å: Chain A: N.398, S.422, Q.424 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.398, A:S.422, A:N.398 Water bridges: A:N.398

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.8: 3 residues within 4Å: Chain A: H.18, I.19, N.44 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.18, A:I.19, A:N.44 NAG.9: 3 residues within 4Å: Chain A: V.142, E.145, N.170 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.145 NAG.11: 3 residues within 4Å: Chain A: N.633, N.636, T.667 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.667 NAG.12: 3 residues within 4Å: Chain A: N.612, H.639, N.641 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.612, A:N.641

1 x FUC: alpha-L-fucopyranose(Non-covalent)

FUC.10: 2 residues within 4Å: Chain A: R.290 Ligands: NAG-NAG.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.290

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L. et al., Structural basis of toll-like receptor 3 signaling with double-stranded RNA. Science (2008)

Release Date

2008-05-06

Peptides

Toll-like receptor 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Toll-like receptor 3

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