SMTL ID : 3cin.1

CRYSTAL STRUCTURE OF A MYO-INOSITOL-1-PHOSPHATE SYNTHASE-RELATED PROTEIN (TM_1419) FROM THERMOTOGA MARITIMA MSB8 AT 1.70 A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: R.241 Chain C: T.223, G.224, A.331 Ligand excluded by PLIP CL.2: 5 residues within 4Å: Chain A: A.230, D.231, S.234, P.375, R.376 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: G.224, A.225, N.250, K.302 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain B: R.241 Chain D: T.223, G.224, A.331 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain B: A.230, D.231, S.234, P.375, R.376 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain B: G.224, A.225, N.250, K.302 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain A: T.223, G.224, A.331 Chain C: R.241 Ligand excluded by PLIP CL.12: 5 residues within 4Å: Chain C: A.230, D.231, S.234, P.375, R.376 Ligand excluded by PLIP CL.13: 4 residues within 4Å: Chain C: G.224, A.225, N.250, K.302 Ligand excluded by PLIP CL.16: 4 residues within 4Å: Chain B: T.223, G.224, A.331 Chain D: R.241 Ligand excluded by PLIP CL.17: 5 residues within 4Å: Chain D: A.230, D.231, S.234, P.375, R.376 Ligand excluded by PLIP CL.18: 4 residues within 4Å: Chain D: G.224, A.225, N.250, K.302 Ligand excluded by PLIP

4 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 7 residues within 4Å: Chain A: N.201, N.365, P.366, G.367, P.368, A.369, E.371 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:P.366, A:P.368, A:E.371, H2O.1, H2O.1 MG.9: 7 residues within 4Å: Chain B: N.201, N.365, P.366, G.367, P.368, A.369, E.371 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:P.366, B:P.368, B:E.371, H2O.9, H2O.10 MG.14: 7 residues within 4Å: Chain C: N.201, N.365, P.366, G.367, P.368, A.369, E.371 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:P.366, C:P.368, C:E.371, H2O.18, H2O.18 MG.19: 7 residues within 4Å: Chain D: N.201, N.365, P.366, G.367, P.368, A.369, E.371 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:P.366, D:P.368, D:E.371, H2O.27, H2O.27

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.5: 29 residues within 4Å: Chain A: G.20, Q.21, G.22, Y.23, V.24, Y.64, D.65, V.66, D.67, K.70, V.99, H.100, S.103, V.104, T.142, C.143, T.144, T.145, A.171, Y.175, V.194, I.195, D.220, G.221, T.223, M.255, D.256, D.328, L.332 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:L.332 Hydrogen bonds: A:Q.21, A:Y.23, A:V.24, A:V.66, A:S.103, A:S.103, A:C.143, A:T.144, A:T.223, A:T.223, A:D.256, A:D.328 Water bridges: A:G.22, A:A.25, A:D.67, A:K.70, A:K.70, A:N.254, A:D.256, A:D.256, A:D.256 NAD.10: 29 residues within 4Å: Chain B: G.20, Q.21, G.22, Y.23, V.24, Y.64, D.65, V.66, D.67, K.70, V.99, H.100, S.103, V.104, T.142, C.143, T.144, T.145, A.171, Y.175, V.194, I.195, D.220, G.221, T.223, M.255, D.256, D.328, L.332 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:L.332 Hydrogen bonds: B:Q.21, B:Y.23, B:V.24, B:V.66, B:S.103, B:S.103, B:C.143, B:T.144, B:T.223, B:T.223, B:D.256, B:D.328 Water bridges: B:G.22, B:A.25, B:D.67, B:K.70, B:K.70, B:N.254, B:D.256, B:D.256, B:D.256 NAD.15: 29 residues within 4Å: Chain C: G.20, Q.21, G.22, Y.23, V.24, Y.64, D.65, V.66, D.67, K.70, V.99, H.100, S.103, V.104, T.142, C.143, T.144, T.145, A.171, Y.175, V.194, I.195, D.220, G.221, T.223, M.255, D.256, D.328, L.332 25 PLIP interactions: 25 interactions with chain C Hydrophobic interactions: C:L.332 Hydrogen bonds: C:Q.21, C:Y.23, C:V.24, C:V.66, C:S.103, C:S.103, C:C.143, C:T.144, C:T.144, C:Y.175, C:T.223, C:D.256 Water bridges: C:G.22, C:A.25, C:D.67, C:K.70, C:K.70, C:E.146, C:T.223, C:N.254, C:N.254, C:D.256, C:D.256, C:D.256 NAD.20: 29 residues within 4Å: Chain D: G.20, Q.21, G.22, Y.23, V.24, Y.64, D.65, V.66, D.67, K.70, V.99, H.100, S.103, V.104, T.142, C.143, T.144, T.145, A.171, Y.175, V.194, I.195, D.220, G.221, T.223, M.255, D.256, D.328, L.332 25 PLIP interactions: 25 interactions with chain D Hydrophobic interactions: D:L.332 Hydrogen bonds: D:Q.21, D:Y.23, D:V.24, D:V.66, D:S.103, D:S.103, D:C.143, D:T.144, D:T.144, D:Y.175, D:T.223, D:D.256 Water bridges: D:G.22, D:A.25, D:D.67, D:K.70, D:K.70, D:E.146, D:T.223, D:N.254, D:N.254, D:D.256, D:D.256, D:D.256

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of MYO-inositol-1-phosphate synthase-related protein (TM1419) from Thermotoga maritima at 1.70 A resolution. To be published

Release Date

2008-03-25

Peptides

Myo-inositol-1-phosphate synthase-related protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Myo-inositol-1-phosphate synthase-related protein