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SMTL ID : 3cjd.1
Crystal structure of putative TetR transcriptional regulator (YP_510936.1) from Jannaschia sp. CCS1 at 1.79 A resolution
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.79 Å
Oligo State
homo-dimer
Ligands
2 x
CL
:
CHLORIDE ION
(Non-functional Binders)
CL.1:
4 residues within 4Å:
Chain A:
H.105
,
P.106
,
K.107
,
L.108
Ligand excluded by PLIP
CL.4:
4 residues within 4Å:
Chain B:
H.105
,
P.106
,
K.107
,
L.108
Ligand excluded by PLIP
2 x
STE
:
STEARIC ACID
(Non-covalent)
STE.2:
16 residues within 4Å:
Chain A:
R.176
,
I.177
,
S.178
Chain B:
V.75
,
L.91
,
M.94
,
S.95
,
Y.98
,
L.112
,
F.113
,
L.134
,
I.138
,
L.161
,
F.162
,
V.165
,
L.193
20
PLIP interactions
:
15 interactions with chain B
,
5 interactions with chain A
Hydrophobic interactions:
B:V.75
,
B:L.91
,
B:Y.98
,
B:F.113
,
B:F.113
,
B:L.134
,
B:L.134
,
B:I.138
,
B:I.138
,
B:L.161
,
B:F.162
,
B:F.162
,
B:V.165
,
B:L.193
Hydrogen bonds:
B:L.112
,
A:S.178
Water bridges:
A:R.176
,
A:R.176
,
A:I.177
Salt bridges:
A:R.176
STE.3:
16 residues within 4Å:
Chain A:
L.71
,
V.75
,
M.94
,
S.95
,
Y.98
,
L.112
,
F.113
,
M.131
,
L.134
,
F.135
,
I.138
,
L.161
,
F.162
Chain B:
R.176
,
I.177
,
S.178
19
PLIP interactions
:
14 interactions with chain A
,
5 interactions with chain B
Hydrophobic interactions:
A:V.75
,
A:Y.98
,
A:L.112
,
A:F.113
,
A:F.113
,
A:L.134
,
A:F.135
,
A:I.138
,
A:I.138
,
A:L.161
,
A:F.162
,
A:F.162
,
A:F.162
Hydrogen bonds:
A:L.112
,
B:S.178
Water bridges:
B:R.176
,
B:I.177
,
B:I.177
Salt bridges:
B:R.176
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Joint Center for Structural Genomics (JCSG), Crystal structure of putative TetR transcriptional regulator (YP_510936.1) from Jannaschia sp. CCS1 at 1.79 A resolution. To be Published
Release Date
2008-04-01
Peptides
Transcriptional regulator, TetR family:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Export Alignment
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Clustal Format
PNG Image
Secondary Structure
None
DSSP
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SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
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Proline
Ser/Thr
Cysteine
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3D Viewer
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Transcriptional regulator, TetR family
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
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Transparent
Resolution
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