SMTL ID : 3cjf.1

Crystal structure of VEGFR2 in complex with a 3,4,5-trimethoxy aniline containing pyrimidine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: K.21, W.22, E.23, F.24, I.51, L.97 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.51 Water bridges: A:S.20, A:E.23 Salt bridges: A:K.53 SO4.2: 3 residues within 4Å: Chain A: R.127, A.244, S.245 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.245 Salt bridges: A:R.127 SO4.3: 2 residues within 4Å: Chain A: R.259, T.264 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.264 Salt bridges: A:R.259 SO4.4: 2 residues within 4Å: Chain A: H.86, R.163 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.163 Salt bridges: A:H.86, A:R.163

1 x SAV: N~4~-(3-methyl-1H-indazol-6-yl)-N~2~-(3,4,5-trimethoxyphenyl)pyrimidine-2,4-diamine(Non-covalent)

SAV.5: 11 residues within 4Å: Chain A: L.35, V.43, A.61, E.112, F.113, C.114, K.115, G.117, N.118, L.176, C.186 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.35, A:L.35, A:V.43, A:A.61, A:F.113, A:L.176 Hydrogen bonds: A:C.114, A:C.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harris, P.A. et al., Discovery of 5-[[4-[(2,3-dimethyl-2H-indazol-6-yl)methylamino]-2-pyrimidinyl]amino]-2-methyl-benzenesulfonamide (Pazopanib), a novel and potent vascular endothelial growth factor receptor inhibitor. J.Med.Chem. (2008)

Release Date

2008-10-07

Peptides

Vascular endothelial growth factor receptor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vascular endothelial growth factor receptor 2

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