SMTL ID : 3cjj.1

Crystal structure of human rage ligand-binding domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: S.135, W.136, H.137, P.142, L.143 Ligands: ZN.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.142 Salt bridges: A:H.137

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain A: H.137 Ligands: ACT.1 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.137, ACT.1 ZN.3: 1 residues within 4Å: Chain A: H.196 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.196, H2O.153, H2O.156, H2O.213 ZN.4: 1 residues within 4Å: Chain A: E.38 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.38 ZN.5: 1 residues within 4Å: Chain A: D.107 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.107, A:D.107, H2O.203, H2O.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koch, M. et al., Structural basis for ligand recognition and activation of RAGE. Structure (2010)

Release Date

2009-03-24

Peptides

Advanced glycosylation end product-specific receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Advanced glycosylation end product-specific receptor