SMTL ID : 3cjt.7 (7 other biounits)

Ribosomal protein L11 methyltransferase (PrmA) in complex with dimethylated ribosomal protein L11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 7 residues within 4Å: Chain A: F.99, A.104, E.105, T.106, W.247 Chain B: A.61 Ligands: 2MM.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.105, A:T.106 Water bridges: A:E.105, A:W.247 NO3.4: 5 residues within 4Å: Chain A: L.192, Y.193 Chain B: K.2 Ligands: SAH.2, 2MM.3 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.2 Water bridges: B:K.2

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.2: 20 residues within 4Å: Chain A: F.99, G.100, T.107, D.126, L.127, G.128, T.129, G.130, L.134, D.149, I.150, D.151, G.174, S.175, N.191, L.192, L.196 Chain B: K.2 Ligands: 2MM.3, NO3.4 9 PLIP interactions: 1 interactions with chain B, 8 interactions with chain A Water bridges: B:K.2, A:F.99, A:T.129, A:D.151 Hydrogen bonds: A:G.128, A:I.150, A:S.175, A:S.175, A:N.191

1 x 2MM: N,N-dimethyl-L-methionine(Covalent)

2MM.3: 12 residues within 4Å: Chain A: T.106, N.191, L.192, Y.193, G.218, L.220, W.247 Chain B: K.2, K.3 Ligands: NO3.1, SAH.2, NO3.4 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.2 Water bridges: B:K.3 Hydrophobic interactions: A:Y.193

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Demirci, H. et al., Multiple-Site Trimethylation of Ribosomal Protein L11 by the PrmA Methyltransferase. Structure (2008)

Release Date

2008-05-20

Peptides

Ribosomal protein L11 methyltransferase: A
50S ribosomal protein L11: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

B
N

Ribosomal protein L11 methyltransferase

50S ribosomal protein L11

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