SMTL ID : 3ck1.1

CRYSTAL STRUCTURE OF a putative thioesterase (REUT_A2179) FROM RALSTONIA EUTROPHA JMP134 AT 1.74 A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

homo-tetramer

Ligands

20 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: E.76, T.77, P.101 Ligand excluded by PLIP CL.2: 6 residues within 4Å: Chain A: G.100, P.101, D.102, S.103, G.104, R.106 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: G.88, Q.89, S.90, S.91 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain A: K.86, S.91, F.92, T.93, R.112 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain B: K.86, S.91, F.92, T.93, R.112 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain B: G.1, M.2 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain B: D.139, E.140 Ligand excluded by PLIP CL.11: 6 residues within 4Å: Chain B: G.100, P.101, D.102, S.103, G.104, R.106 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain B: P.127, D.128 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain B: Q.89, S.90, S.91 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain C: E.76, T.77, P.101 Ligand excluded by PLIP CL.18: 6 residues within 4Å: Chain C: G.100, P.101, D.102, S.103, G.104, R.106 Ligand excluded by PLIP CL.19: 4 residues within 4Å: Chain C: G.88, Q.89, S.90, S.91 Ligand excluded by PLIP CL.20: 5 residues within 4Å: Chain C: K.86, S.91, F.92, T.93, R.112 Ligand excluded by PLIP CL.24: 5 residues within 4Å: Chain D: K.86, S.91, F.92, T.93, R.112 Ligand excluded by PLIP CL.25: 2 residues within 4Å: Chain D: G.1, M.2 Ligand excluded by PLIP CL.26: 2 residues within 4Å: Chain D: D.139, E.140 Ligand excluded by PLIP CL.27: 6 residues within 4Å: Chain D: G.100, P.101, D.102, S.103, G.104, R.106 Ligand excluded by PLIP CL.28: 2 residues within 4Å: Chain D: P.127, D.128 Ligand excluded by PLIP CL.29: 3 residues within 4Å: Chain D: Q.89, S.90, S.91 Ligand excluded by PLIP

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 7 residues within 4Å: Chain A: V.23, F.24, Y.25, F.68 Chain B: P.60, T.61 Ligands: GOL.14 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:T.61, B:T.61, A:V.23, A:Y.25 GOL.6: 9 residues within 4Å: Chain A: N.33, F.48, H.52, G.58, V.59, P.60 Chain B: F.24, Y.25 Chain C: F.14 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.59 GOL.7: 6 residues within 4Å: Chain A: F.68, A.70, P.71 Chain B: P.60, T.61, A.62 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.61, A:A.70 GOL.14: 9 residues within 4Å: Chain A: Y.25 Chain B: N.33, F.48, H.52, G.58, V.59, P.60 Chain D: F.14 Ligands: GOL.5 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.33, B:V.59 GOL.15: 5 residues within 4Å: Chain B: D.45, W.46, P.127, P.129, V.130 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.45 Water bridges: B:W.46 GOL.16: 6 residues within 4Å: Chain A: P.60, T.61 Chain B: F.68, V.69, A.70, P.71 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:F.68 Water bridges: B:Y.28, B:Y.28, B:Y.28, A:T.61, A:T.61 GOL.21: 7 residues within 4Å: Chain C: V.23, F.24, Y.25, F.68 Chain D: P.60, T.61 Ligands: GOL.30 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:T.61, D:T.61, D:T.61, C:V.23, C:Y.25 GOL.22: 9 residues within 4Å: Chain A: F.14 Chain C: N.33, F.48, H.52, G.58, V.59, P.60 Chain D: F.24, Y.25 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Water bridges: D:Y.25 Hydrogen bonds: C:V.59 GOL.23: 6 residues within 4Å: Chain C: F.68, A.70, P.71 Chain D: P.60, T.61, A.62 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:T.61, C:A.70 GOL.30: 9 residues within 4Å: Chain B: F.14 Chain C: Y.25 Chain D: N.33, F.48, H.52, G.58, V.59, P.60 Ligands: GOL.21 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.33, D:V.59 GOL.31: 5 residues within 4Å: Chain D: D.45, W.46, P.127, P.129, V.130 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:D.45, D:D.45 Water bridges: D:W.46 GOL.32: 6 residues within 4Å: Chain C: P.60, T.61 Chain D: F.68, V.69, A.70, P.71 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D Water bridges: C:T.61, C:T.61, D:Y.28 Hydrogen bonds: D:F.68

Links

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Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of putative thioesterase (YP_296387.1) from Ralstonia eutropha JMP134 at 1.74 A resolution. To be published

Release Date

2008-03-25

Peptides

Putative thioesterase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Putative thioesterase