SMTL ID : 3cl0.1

N1 Neuraminidase H274Y + oseltamivir

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x G39: (3R,4R,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid(Non-covalent)

G39.1: 15 residues within 4Å: Chain A: R.36, E.37, D.69, R.70, W.97, I.141, R.143, S.165, E.195, E.196, R.211, N.213, Y.262, R.286, Y.320 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.97, A:I.141 Hydrogen bonds: A:E.37, A:D.69, A:R.70, A:Y.320 Water bridges: A:R.74, A:E.196 Salt bridges: A:R.36, A:R.211, A:R.286 G39.3: 15 residues within 4Å: Chain B: R.36, E.37, D.69, R.70, W.97, I.141, R.143, S.165, E.195, E.196, R.211, N.213, Y.262, R.286, Y.320 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:W.97, B:I.141 Hydrogen bonds: B:E.37, B:D.69, B:R.70, B:Y.320 Water bridges: B:R.74, B:E.196 Salt bridges: B:R.36, B:R.211, B:R.286 G39.5: 15 residues within 4Å: Chain C: R.36, E.37, D.69, R.70, W.97, I.141, R.143, S.165, E.195, E.196, R.211, N.213, Y.262, R.286, Y.320 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:W.97, C:I.141 Hydrogen bonds: C:E.37, C:D.69, C:R.70, C:Y.320 Water bridges: C:R.74, C:E.196 Salt bridges: C:R.36, C:R.211, C:R.286 G39.7: 15 residues within 4Å: Chain D: R.36, E.37, D.69, R.70, W.97, I.141, R.143, S.165, E.195, E.196, R.211, N.213, Y.262, R.286, Y.320 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:W.97, D:I.141 Hydrogen bonds: D:E.37, D:D.69, D:R.70, D:Y.320 Water bridges: D:R.74, D:E.196 Salt bridges: D:R.36, D:R.211, D:R.286

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.212, G.216, D.242, G.260, Y.262, G.263 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.212, A:G.216, A:D.242, A:G.260, H2O.7 CA.4: 6 residues within 4Å: Chain B: D.212, G.216, D.242, G.260, Y.262, G.263 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.212, B:G.216, B:D.242, B:G.260, H2O.14 CA.6: 6 residues within 4Å: Chain C: D.212, G.216, D.242, G.260, Y.262, G.263 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.212, C:G.216, C:D.242, C:G.260, H2O.21 CA.8: 6 residues within 4Å: Chain D: D.212, G.216, D.242, G.260, Y.262, G.263 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.212, D:G.216, D:D.242, D:G.260, H2O.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Collins, P.J. et al., Crystal structures of oseltamivir-resistant influenza virus neuraminidase mutants. Nature (2008)

Release Date

2008-05-20

Peptides

Neuraminidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Neuraminidase

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