SMTL ID : 3clj.1

Structure of the RNA polymerase II CTD-interacting domain of Nrd1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: L.16, K.17, S.18, I.20 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.17, A:S.18

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: S.18, I.20, H.116, K.119 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.56, A:K.119, A:K.119 GOL.3: 3 residues within 4Å: Chain A: S.21, S.23, R.24 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.21, A:S.21, A:R.24 GOL.4: 6 residues within 4Å: Chain A: I.36, E.75, T.76, T.89, C.90, A.91 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.90, A:A.91 GOL.5: 5 residues within 4Å: Chain A: M.1, D.2, F.3, Y.31, H.35 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.1, A:F.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vasiljeva, L. et al., The Nrd1-Nab3-Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain. Nat.Struct.Mol.Biol. (2008)

Release Date

2008-07-29

Peptides

Protein NRD1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein NRD1