- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.77 Å
- Oligo State
- homo-tetramer
- Ligands
- 18 x SO4: SULFATE ION(Non-functional Binders)
- 4 x G3H: GLYCERALDEHYDE-3-PHOSPHATE(Covalent)
G3H.7: 11 residues within 4Å:- Chain A: S.150, C.151, T.152, T.176, H.178, T.181, T.209, R.232
- Ligands: SO4.1, SO4.2, NAD.8
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:S.150, A:S.150, A:C.151, A:T.152, A:T.152, A:T.209, A:R.232
- Water bridges: A:R.196, A:R.196
- Salt bridges: A:H.178
G3H.12: 11 residues within 4Å:- Chain B: S.150, C.151, T.152, T.176, H.178, T.181, T.209, R.232
- Ligands: SO4.10, SO4.11, NAD.13
12 PLIP interactions:12 interactions with chain B- Hydrogen bonds: B:S.150, B:C.151, B:T.152, B:T.152, B:T.209, B:R.232
- Water bridges: B:R.196, B:R.196, B:R.196, B:R.196, B:T.209
- Salt bridges: B:H.178
G3H.21: 11 residues within 4Å:- Chain C: S.150, C.151, T.152, T.176, H.178, T.181, T.209, R.232
- Ligands: SO4.18, SO4.19, NAD.22
10 PLIP interactions:10 interactions with chain C- Hydrogen bonds: C:S.150, C:C.151, C:T.152, C:T.152, C:T.209, C:R.232
- Water bridges: C:R.196, C:R.196, C:T.209
- Salt bridges: C:H.178
G3H.32: 11 residues within 4Å:- Chain D: S.150, C.151, T.152, T.176, H.178, T.181, T.209, R.232
- Ligands: SO4.25, SO4.26, NAD.33
9 PLIP interactions:9 interactions with chain D- Hydrogen bonds: D:S.150, D:C.151, D:T.152, D:T.152, D:T.209, D:R.232
- Water bridges: D:R.196, D:R.196
- Salt bridges: D:H.178
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.8: 24 residues within 4Å:- Chain A: G.8, F.9, G.10, R.11, I.12, N.32, D.33, L.34, E.76, R.77, S.95, T.96, G.97, R.98, F.99, S.119, A.120, C.151, N.182, N.314, Y.318
- Chain D: L.189
- Ligands: SO4.2, G3H.7
23 PLIP interactions:22 interactions with chain A, 1 interactions with chain D- Hydrophobic interactions: A:I.12, A:I.12, A:Y.318
- Hydrogen bonds: A:F.9, A:R.11, A:I.12, A:N.32, A:R.77, A:N.182, A:N.314
- Water bridges: A:N.7, A:N.7, A:G.10, A:G.13, A:R.14, A:R.77, A:G.97, A:R.98, A:S.119, A:N.182, A:N.182, A:E.315, D:L.187
NAD.13: 24 residues within 4Å:- Chain B: G.8, F.9, G.10, R.11, I.12, N.32, D.33, L.34, E.76, R.77, S.95, T.96, G.97, R.98, F.99, S.119, A.120, C.151, N.182, N.314, Y.318
- Chain C: L.189
- Ligands: SO4.11, G3H.12
19 PLIP interactions:18 interactions with chain B, 1 interactions with chain C- Hydrophobic interactions: B:I.12, B:I.12, B:Y.318
- Hydrogen bonds: B:F.9, B:R.11, B:I.12, B:N.32, B:R.77, B:N.182, B:N.314
- Water bridges: B:N.7, B:N.7, B:G.10, B:G.13, B:G.97, B:S.119, B:N.182, B:N.182, C:L.187
NAD.22: 24 residues within 4Å:- Chain B: L.189
- Chain C: G.8, F.9, G.10, R.11, I.12, N.32, D.33, L.34, E.76, R.77, S.95, T.96, G.97, R.98, F.99, S.119, A.120, C.151, N.182, N.314, Y.318
- Ligands: SO4.19, G3H.21
22 PLIP interactions:21 interactions with chain C, 1 interactions with chain B- Hydrophobic interactions: C:I.12, C:I.12, C:Y.318
- Hydrogen bonds: C:F.9, C:R.11, C:I.12, C:N.32, C:R.77, C:N.182, C:N.314
- Water bridges: C:N.7, C:N.7, C:G.10, C:G.13, C:R.14, C:R.77, C:G.97, C:S.119, C:N.182, C:N.182, C:N.182, B:L.187
NAD.33: 25 residues within 4Å:- Chain A: L.189, P.190
- Chain D: G.8, F.9, G.10, R.11, I.12, N.32, D.33, L.34, E.76, R.77, S.95, T.96, G.97, R.98, F.99, S.119, A.120, C.151, N.182, N.314, Y.318
- Ligands: SO4.26, G3H.32
22 PLIP interactions:21 interactions with chain D, 1 interactions with chain A- Hydrophobic interactions: D:I.12, D:I.12, D:Y.318
- Hydrogen bonds: D:F.9, D:R.11, D:I.12, D:N.32, D:R.77, D:N.182, D:N.314
- Water bridges: D:N.7, D:N.7, D:G.10, D:G.13, D:R.14, D:R.77, D:G.97, D:S.119, D:N.182, D:N.182, D:E.315, A:L.187
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.9: 2 residues within 4Å:- Chain A: K.304
- Chain B: R.171
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:K.304, B:R.171, B:R.171
- Water bridges: A:E.246
GOL.14: 6 residues within 4Å:- Chain B: G.132, V.133, N.134, Q.135, D.136, K.161
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:Q.135, B:Q.135, B:D.136, B:D.136, B:K.161, B:K.161
GOL.15: 5 residues within 4Å:- Chain B: D.183, R.185, P.190, H.191, K.192
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:D.183, B:R.185, B:K.192
GOL.16: 4 residues within 4Å:- Chain B: K.213, A.216, K.223, G.224
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.213, B:G.224
- Water bridges: B:L.222, B:K.225
GOL.17: 5 residues within 4Å:- Chain B: V.49, H.50, G.51, N.285
- Chain D: R.282
6 PLIP interactions:1 interactions with chain D, 5 interactions with chain B- Hydrogen bonds: D:R.282, B:V.49, B:N.285
- Water bridges: B:R.282, B:R.282, B:N.285
GOL.24: 5 residues within 4Å:- Chain C: N.15, R.18, H.50, G.286, T.316
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:N.15, C:R.18, C:H.50
- Water bridges: C:H.50
GOL.34: 2 residues within 4Å:- Chain C: R.171
- Chain D: K.304
3 PLIP interactions:1 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:K.304, C:R.171, C:R.171
GOL.35: 5 residues within 4Å:- Chain D: V.133, N.134, Q.135, D.136, K.161
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:Q.135, D:D.136, D:K.161
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Moniot, S. et al., Trapping of the Thioacylglyceraldehyde-3-phosphate Dehydrogenase Intermediate from Bacillus stearothermophilus: DIRECT EVIDENCE FOR A FLIP-FLOP MECHANISM. J.Biol.Chem. (2008)
- Release Date
- 2008-06-17
- Peptides
- Glyceraldehyde-3-phosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
OB
PC
QD
R
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.77 Å
- Oligo State
- homo-tetramer
- Ligands
- 18 x SO4: SULFATE ION(Non-functional Binders)
- 4 x G3H: GLYCERALDEHYDE-3-PHOSPHATE(Covalent)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Moniot, S. et al., Trapping of the Thioacylglyceraldehyde-3-phosphate Dehydrogenase Intermediate from Bacillus stearothermophilus: DIRECT EVIDENCE FOR A FLIP-FLOP MECHANISM. J.Biol.Chem. (2008)
- Release Date
- 2008-06-17
- Peptides
- Glyceraldehyde-3-phosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
OB
PC
QD
R