SMTL ID : 3cmj.1

Crystal Structure of engineered Beta-Glucosidase from Soil metagenome

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

22 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: G.43, G.71, R.104 Ligand excluded by PLIP NA.2: 3 residues within 4Å: Chain A: P.62, G.63, G.68 Ligand excluded by PLIP NA.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.4: 6 residues within 4Å: Chain A: K.66, N.67, D.69, E.427, Y.429, S.430 Ligand excluded by PLIP NA.5: 1 residues within 4Å: Chain A: S.70 Ligand excluded by PLIP NA.6: 2 residues within 4Å: Chain A: R.89, G.92 Ligand excluded by PLIP NA.7: 3 residues within 4Å: Chain A: S.109, W.147, D.150 Ligand excluded by PLIP NA.8: 3 residues within 4Å: Chain A: Q.106, R.111, E.165 Ligand excluded by PLIP NA.9: 2 residues within 4Å: Chain A: Y.429, F.440 Ligand excluded by PLIP NA.10: 4 residues within 4Å: Chain A: E.126, H.129, K.130 Ligands: NA.11 Ligand excluded by PLIP NA.11: 3 residues within 4Å: Chain A: H.129, K.130 Ligands: NA.10 Ligand excluded by PLIP NA.12: 5 residues within 4Å: Chain A: L.155, S.156, R.157, R.212, H.216 Ligand excluded by PLIP NA.13: 4 residues within 4Å: Chain A: E.151, S.156, E.158, S.159 Ligand excluded by PLIP NA.14: 3 residues within 4Å: Chain A: Q.226, A.230 Ligands: NA.15 Ligand excluded by PLIP NA.15: 2 residues within 4Å: Chain A: A.230 Ligands: NA.14 Ligand excluded by PLIP NA.16: 5 residues within 4Å: Chain A: F.200, E.424, W.425, A.426, E.427 Ligand excluded by PLIP NA.17: 1 residues within 4Å: Chain A: A.255 Ligand excluded by PLIP NA.18: 3 residues within 4Å: Chain A: F.375, D.376, Q.389 Ligand excluded by PLIP NA.19: 2 residues within 4Å: Chain A: W.192, Q.267 Ligand excluded by PLIP NA.20: 1 residues within 4Å: Chain A: Q.301 Ligand excluded by PLIP NA.21: 7 residues within 4Å: Chain A: Y.315, T.339, W.343, G.372, A.373, Y.393 Ligands: NA.22 Ligand excluded by PLIP NA.22: 7 residues within 4Å: Chain A: T.339, M.341, W.343, A.373, A.374, F.433 Ligands: NA.21 Ligand excluded by PLIP

1 x SRT: S,R MESO-TARTARIC ACID(Non-covalent)

SRT.23: 10 residues within 4Å: Chain A: Q.40, H.141, N.185, E.186, N.313, Y.315, E.370, W.417, E.424, W.425 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.40, A:H.141, A:N.185, A:N.313, A:E.370, A:W.417 Water bridges: A:N.422, A:E.424 Salt bridges: A:H.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nam, K.H. et al., Crystal structure of engineered beta-glucosidase from a soil metagenome. Proteins (2008)

Release Date

2008-10-07

Peptides

Beta-glucosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-glucosidase