SMTL ID : 3cnl.1

Crystal structure of GNP-bound YlqF from T. maritima

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 14 residues within 4Å: Chain A: N.54, K.55, D.57, I.58, H.82, K.83, P.108, N.109, T.110, G.111, K.112, S.113, T.114, I.154 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:N.54, A:K.55, A:K.55, A:K.83, A:K.83, A:N.109, A:T.110, A:G.111, A:K.112, A:K.112, A:S.113, A:T.114, A:T.114 Water bridges: A:D.57, A:K.83, A:G.84, A:N.109, A:K.112, A:S.113, A:S.113, A:S.113, A:Q.237, A:Q.237 Salt bridges: A:D.57 pi-Cation interactions: A:K.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, D.J. et al., Crystal structure of YlqF, a circularly permuted GTPase: Implications for its GTPase activation in 50 S ribosomal subunit assembly. Proteins (2008)

Release Date

2008-06-24

Peptides

Putative uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative uncharacterized protein

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