- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.3: 29 residues within 4Å:- Chain A: C.48, H.49, T.50, Y.96, C.181, T.185, G.206, L.207, G.208, G.209, V.210, I.229, D.230, I.231, K.235, C.275, A.276, T.281, I.299, G.300, V.301, T.324, F.325, F.326, R.376
- Chain B: I.316
- Ligands: ZN.1, EDO.5, ACY.6
20 PLIP interactions:20 interactions with chain A- Hydrophobic interactions: A:T.185, A:V.210
- Hydrogen bonds: A:H.49, A:L.207, A:L.207, A:G.209, A:V.210, A:I.231, A:A.276, A:I.299, A:V.301, A:F.326, A:R.376
- Water bridges: A:H.49, A:G.208, A:G.211, A:K.235
- Salt bridges: A:H.49, A:K.235, A:R.376
NAD.9: 30 residues within 4Å:- Chain A: I.316
- Chain B: C.48, H.49, T.50, Y.96, C.181, T.185, G.206, L.207, G.208, G.209, V.210, I.229, D.230, I.231, K.235, C.275, A.276, T.281, I.299, G.300, V.301, T.324, F.325, F.326, M.369, R.376
- Ligands: ZN.7, EDO.10, ACY.12
23 PLIP interactions:23 interactions with chain B- Hydrophobic interactions: B:T.185, B:V.210
- Hydrogen bonds: B:H.49, B:T.50, B:Y.96, B:G.206, B:L.207, B:G.209, B:V.210, B:I.231, B:K.235, B:A.276, B:I.299, B:V.301, B:F.326, B:R.376
- Water bridges: B:H.49, B:G.208, B:G.211, B:M.369
- Salt bridges: B:H.49, B:K.235, B:R.376
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 5 residues within 4Å:- Chain A: S.125, D.126, Q.127, Q.128, L.129
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.125, A:Q.127, A:Q.128, A:L.129, A:L.129
EDO.5: 7 residues within 4Å:- Chain A: F.205, P.250, I.257, E.280, T.281, A.284
- Ligands: NAD.3
No protein-ligand interaction detected (PLIP)EDO.10: 7 residues within 4Å:- Chain B: F.205, I.229, P.250, I.257, T.281, A.284
- Ligands: NAD.9
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.280
EDO.11: 5 residues within 4Å:- Chain B: S.125, D.126, Q.127, Q.128, L.129
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:S.125, B:D.126, B:Q.127, B:Q.128, B:L.129
- 3 x ACY: ACETIC ACID(Non-functional Binders)
ACY.6: 8 residues within 4Å:- Chain A: C.48, T.50, H.70, Y.96, F.148, C.181
- Ligands: ZN.1, NAD.3
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:T.50
- Hydrogen bonds: A:T.50
- Salt bridges: A:H.70
ACY.12: 8 residues within 4Å:- Chain B: C.48, T.50, H.70, Y.96, F.148, C.181
- Ligands: ZN.7, NAD.9
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:T.50
- Salt bridges: B:H.70
ACY.13: 3 residues within 4Å:- Chain A: S.305
- Chain B: F.311, E.313
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:G.304, A:S.305, B:E.313
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kavanagh, K.L. et al., Crystal structure of human class II alcohol dehydrogenase (ADH4) in complex with NAD and Zn. To be Published
- Release Date
- 2008-04-15
- Peptides
- Alcohol dehydrogenase 4: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x ACY: ACETIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kavanagh, K.L. et al., Crystal structure of human class II alcohol dehydrogenase (ADH4) in complex with NAD and Zn. To be Published
- Release Date
- 2008-04-15
- Peptides
- Alcohol dehydrogenase 4: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B