SMTL ID : 3cov.1

Crystal Structure of Mycobacterium Tuberculosis Pantothenate Synthetase at 1.5 Ang resolution- apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: H.45, H.48, Y.83, K.161, S.197, S.198 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.198 Water bridges: A:H.45, A:K.161, A:K.161, A:K.161, A:S.198, A:S.198 Salt bridges: A:H.45, A:H.48, A:K.161 SO4.2: 3 residues within 4Å: Chain A: R.57, P.59, R.155 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.34 Salt bridges: A:R.57, A:R.155 SO4.10: 4 residues within 4Å: Chain B: H.45, K.161, S.197, S.198 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.198, B:S.198 Water bridges: B:S.198, B:S.198 Salt bridges: B:H.45, B:H.48, B:K.161 SO4.11: 2 residues within 4Å: Chain B: P.59, R.155 2 PLIP interactions: 2 interactions with chain B Water bridges: B:R.155 Salt bridges: B:R.155

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: M.41, Q.73, V.140, V.143, V.144, Q.165 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.73, A:Q.73, A:Q.165 GOL.4: 10 residues within 4Å: Chain A: M.110, Y.111, P.112, D.113, G.114, L.115, R.116, T.117, K.146 Chain B: D.175 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:M.110, A:D.113, A:R.116, A:K.146 Water bridges: B:D.175 GOL.5: 3 residues within 4Å: Chain A: P.112, D.113 Ligands: EOH.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.113, A:D.113 GOL.12: 5 residues within 4Å: Chain B: P.39, Q.73, V.140, V.143, Q.165 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:P.39, B:Q.73, B:Q.165

5 x EOH: ETHANOL(Non-functional Binders)

EOH.6: 5 residues within 4Å: Chain A: L.115, R.116, T.118 Chain B: Q.120, P.121 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:T.118, B:Q.120 Hydrogen bonds: A:L.115 EOH.7: 1 residues within 4Å: Ligands: GOL.5 No protein-ligand interaction detected (PLIP) EOH.8: 2 residues within 4Å: Chain A: A.216, T.219 No protein-ligand interaction detected (PLIP) EOH.9: 4 residues within 4Å: Chain A: N.177 Chain B: P.18, G.19, A.22 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:A.22 Hydrogen bonds: A:N.177 EOH.13: 6 residues within 4Å: Chain B: S.25, R.26, R.29, V.35, V.151, R.152 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ciulli, A. et al., Inhibition of Mycobacterium tuberculosis pantothenate synthetase by analogues of the reaction intermediate. Chembiochem (2008)

Release Date

2008-10-07

Peptides

Pantothenate synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pantothenate synthetase

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