SMTL ID : 3cp6.1

Crystal structure of human farnesyl diphosphate synthase (T201A mutant) complexed with Mg and biphosphonate inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.126, D.130 Ligands: MG.3, RSX.4 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.126, A:D.130, H2O.1, H2O.2 MG.2: 2 residues within 4Å: Chain A: D.266 Ligands: RSX.4 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.266, H2O.2, H2O.5, H2O.5 MG.3: 4 residues within 4Å: Chain A: D.126, D.130 Ligands: MG.1, RSX.4 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.126, A:D.130, H2O.1, H2O.1, H2O.3 MG.5: 4 residues within 4Å: Chain B: D.126, D.130 Ligands: MG.7, RSX.8 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.126, B:D.130, H2O.9, H2O.10 MG.6: 2 residues within 4Å: Chain B: D.266 Ligands: RSX.8 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.266, H2O.10, H2O.13, H2O.13 MG.7: 4 residues within 4Å: Chain B: D.126, D.130 Ligands: MG.5, RSX.8 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.126, B:D.130, H2O.9, H2O.9, H2O.11

2 x RSX: (4aS,7aR)-octahydro-1H-cyclopenta[b]pyridine-6,6-diylbis(phosphonic acid)(Non-covalent)

RSX.4: 14 residues within 4Å: Chain A: L.123, D.126, D.130, R.135, Q.194, K.223, F.226, Y.227, Q.263, D.266, K.280 Ligands: MG.1, MG.2, MG.3 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.123, A:F.226, A:F.226 Hydrogen bonds: A:R.135, A:R.135, A:K.223, A:Q.263, A:K.280 Water bridges: A:D.126, A:D.130, A:D.130, A:D.130, A:S.132, A:Q.194, A:D.270, A:K.289 RSX.8: 14 residues within 4Å: Chain B: L.123, D.126, D.130, R.135, Q.194, K.223, F.226, Y.227, Q.263, D.266, K.280 Ligands: MG.5, MG.6, MG.7 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:L.123, B:F.226, B:F.226 Hydrogen bonds: B:R.135, B:R.135, B:K.223, B:Q.263, B:K.280 Water bridges: B:D.126, B:S.132, B:S.132, B:Q.194, B:Y.227, B:D.284, B:K.289

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pilka, E.S. et al., Human farnesyl diphosphate synthase (T201A mutant) complexed with Mg and biphosphonate inhibitor. To be Published

Release Date

2008-04-15

Peptides

Farnesyl pyrophosphate synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Farnesyl pyrophosphate synthetase