SMTL ID : 3cp8.2 (1 other biounit)

Crystal structure of GidA from Chlorobium tepidum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 32 residues within 4Å: Chain A: G.28, A.29, G.30, H.31, A.32, I.50, T.51, S.52, D.53, A.56, S.61, C.62, N.63, K.71, D.138, T.139, V.140, A.169, C.170, G.171, F.173, R.189, V.196, T.215, G.216, G.385, Q.386, S.391, G.392, Y.393, E.394, A.396 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:T.215 Hydrogen bonds: A:G.28, A:A.29, A:G.30, A:H.31, A:H.31, A:A.32, A:S.52, A:D.53, A:S.61, A:S.61, A:N.63, A:V.140, A:V.140, A:T.172, A:R.189, A:R.189, A:Q.386, A:Q.386, A:G.392, A:Y.393 pi-Stacking: A:Y.393 FAD.2: 32 residues within 4Å: Chain B: G.28, A.29, G.30, H.31, A.32, I.50, T.51, S.52, D.53, A.56, S.61, C.62, N.63, K.71, D.138, T.139, V.140, A.169, C.170, G.171, F.173, R.189, V.196, T.215, G.216, G.385, Q.386, S.391, G.392, Y.393, E.394, A.396 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:T.215 Hydrogen bonds: B:G.28, B:A.29, B:G.30, B:H.31, B:H.31, B:A.32, B:S.52, B:D.53, B:S.61, B:S.61, B:N.63, B:V.140, B:V.140, B:R.189, B:R.189, B:Q.386, B:Q.386, B:G.392, B:Y.393 Salt bridges: B:H.31 pi-Stacking: B:Y.393 pi-Cation interactions: B:K.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meyer, S. et al., Crystal structures of the conserved tRNA-modifying enzyme GidA: implications for its interaction with MnmE and substrate. J.Mol.Biol. (2008)

Release Date

2008-06-24

Peptides

tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA

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