SMTL ID : 3cps.3 (2 other biounits)

Crystal structure of Cryptosporidium parvum glyceraldehyde-3-phosphate dehydrogenase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 25 residues within 4Å: Chain A: N.23, G.24, F.25, G.26, R.27, I.28, N.48, D.49, P.50, F.51, M.52, A.93, K.94, S.112, T.113, G.114, F.116, S.136, A.137, C.168, H.195, T.198, A.199, N.334, Y.338 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:I.28, A:I.28, A:Y.338 Hydrogen bonds: A:N.23, A:F.25, A:F.25, A:R.27, A:I.28, A:N.48, A:K.94, A:N.334 Water bridges: A:F.25, A:G.26, A:G.29, A:R.30, A:S.136, A:S.136, A:A.199, A:A.199, A:E.335 pi-Stacking: A:F.51 NAD.2: 25 residues within 4Å: Chain B: N.23, G.24, F.25, G.26, R.27, I.28, N.48, D.49, P.50, F.51, M.52, A.93, K.94, S.112, T.113, G.114, F.116, S.136, A.137, C.168, H.195, T.198, A.199, N.334, Y.338 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:I.28, B:I.28, B:Y.338 Hydrogen bonds: B:N.23, B:F.25, B:F.25, B:R.27, B:I.28, B:N.48, B:K.94, B:N.334 Water bridges: B:F.25, B:G.26, B:G.29, B:R.30, B:S.136, B:S.136, B:A.199, B:A.199, B:E.335, B:E.335 pi-Stacking: B:F.51 NAD.3: 23 residues within 4Å: Chain C: N.23, G.24, F.25, G.26, R.27, I.28, N.48, D.49, P.50, F.51, M.52, A.93, K.94, S.112, T.113, G.114, F.116, S.136, A.137, C.168, A.199, N.334, Y.338 17 PLIP interactions: 16 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:I.28, C:Y.338 Hydrogen bonds: C:N.23, C:F.25, C:R.27, C:I.28, C:N.48, C:K.94, C:N.334 Water bridges: C:F.25, C:G.26, C:G.29, C:G.114, C:A.199, C:A.199, C:E.335, B:D.205 NAD.4: 23 residues within 4Å: Chain D: N.23, G.24, F.25, G.26, R.27, I.28, N.48, D.49, P.50, F.51, M.52, A.93, K.94, S.112, T.113, G.114, F.116, S.136, A.137, C.168, A.199, N.334, Y.338 18 PLIP interactions: 17 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: D:I.28, D:Y.338 Hydrogen bonds: D:N.23, D:F.25, D:R.27, D:I.28, D:N.48, D:K.94, D:N.334 Water bridges: D:F.25, D:G.26, D:G.29, D:G.114, D:A.199, D:A.199, D:E.335, D:E.335, A:D.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wernimont, A.K. et al., Crystal structure of Cryptosporidium parvum glyceraldehyde-3-phosphate dehydrogenase. To be Published

Release Date

2008-04-15

Peptides

Glyceraldehyde 3-phosphate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
B

D
B

Glyceraldehyde 3-phosphate dehydrogenase

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