SMTL ID : 3cq5.1 (1 other biounit)

Histidinol-phosphate aminotransferase from Corynebacterium glutamicum in complex with PMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: Y.24, Y.126, S.127, N.175, R.336, R.345 Ligands: 144.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.24, A:N.36, A:S.127, A:N.175 Salt bridges: A:R.336, A:R.345 SO4.2: 3 residues within 4Å: Chain A: R.15, E.16 Chain B: R.117 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.16 Salt bridges: A:R.15, B:R.117 SO4.3: 3 residues within 4Å: Chain A: R.117 Chain B: R.15, E.16 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.16 Water bridges: B:R.15, B:R.15 Salt bridges: B:R.15, A:R.117 SO4.7: 8 residues within 4Å: Chain B: Y.24, Y.126, S.127, N.175, R.336, R.345 Ligands: 144.6, PMP.8 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Y.24, B:N.175 Water bridges: B:Y.24, B:S.127, B:S.127 Salt bridges: B:R.336, B:R.345

2 x 144: TRIS-HYDROXYMETHYL-METHYL-AMMONIUM(Non-covalent)

144.4: 11 residues within 4Å: Chain A: Y.24, T.37, N.102, Y.126, M.128, K.231 Chain B: Y.66, P.259, Y.260 Ligands: SO4.1, PMP.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.37, A:N.102, A:N.102, A:K.231 144.6: 11 residues within 4Å: Chain A: Y.66, R.69, Y.260 Chain B: Y.24, G.25, A.26, T.37, Y.126, R.336 Ligands: SO4.7, PMP.8 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:Y.24, B:Y.24, B:A.26, B:Y.126, B:Y.126, A:R.69, A:Y.260 pi-Cation interactions: A:Y.66

2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PMP.5: 15 residues within 4Å: Chain A: G.100, S.101, N.102, Y.126, T.171, N.175, D.200, A.202, Y.203, T.228, S.230, K.231, R.239 Chain B: Y.66 Ligands: 144.4 16 PLIP interactions: 15 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.126, A:T.171, A:A.202, A:Y.203 Hydrogen bonds: A:S.101, A:N.102, A:N.102, A:N.175, A:Y.203, A:T.228, A:S.230, A:K.231, B:Y.66 Water bridges: A:S.101 Salt bridges: A:R.239 pi-Stacking: A:Y.126 PMP.8: 16 residues within 4Å: Chain A: Y.66 Chain B: G.100, S.101, N.102, Y.126, T.171, N.175, D.200, A.202, Y.203, T.228, S.230, K.231, R.239 Ligands: 144.6, SO4.7 17 PLIP interactions: 16 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:Y.126, B:T.171, B:A.202, B:Y.203 Hydrogen bonds: B:S.101, B:N.102, B:N.102, B:N.175, B:T.228, B:T.228, B:S.230, B:K.231, B:K.231, A:Y.66 Water bridges: B:S.101 Salt bridges: B:R.239 pi-Stacking: B:Y.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marienhagen, J. et al., Insights into the structural basis of substrate recognition by histidinol-phosphate aminotransferase from Corynebacterium glutamicum. Acta Crystallogr.,Sect.D (2008)

Release Date

2008-07-01

Peptides

Histidinol-phosphate aminotransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Histidinol-phosphate aminotransferase

Related Entries With Identical Sequence