SMTL ID : 3cqy.3 (2 other biounits)

Crystal structure of a functionally unknown protein (SO_1313) from Shewanella oneidensis MR-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: R.135, P.147, L.148, V.149 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: G.48, R.51, R.62, R.65 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: R.68, K.72 Chain B: A.140 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain B: R.135, P.147, L.148, V.149 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain B: G.48, R.51, R.62, R.65 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain A: A.140 Chain B: R.68, K.72 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain C: R.135, P.147, L.148, V.149 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain C: G.48, R.51, R.62, R.65 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain C: R.68, K.72 Chain D: A.140 Ligand excluded by PLIP CL.14: 4 residues within 4Å: Chain D: R.135, P.147, L.148, V.149 Ligand excluded by PLIP CL.15: 4 residues within 4Å: Chain D: G.48, R.51, R.62, R.65 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain C: A.140 Chain D: R.68, K.72 Ligand excluded by PLIP

4 x SIN: SUCCINIC ACID(Non-covalent)

SIN.4: 8 residues within 4Å: Chain B: H.98, T.101, H.104, R.135, A.146, I.172, D.189, T.243 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:A.146 Hydrogen bonds: B:T.101 Water bridges: B:I.172, B:G.244 Salt bridges: B:H.98, B:H.104, B:R.135 SIN.5: 8 residues within 4Å: Chain A: T.101, H.104, R.135, A.146, I.172, D.189, T.243, G.244 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.146 Hydrogen bonds: A:D.189 Water bridges: A:T.101, A:T.101 Salt bridges: A:H.104, A:R.135 SIN.12: 8 residues within 4Å: Chain D: H.98, T.101, H.104, R.135, A.146, I.172, D.189, T.243 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:A.146 Water bridges: D:T.101, D:T.101, D:I.172, D:G.244 Salt bridges: D:H.98, D:H.104, D:R.135 SIN.13: 8 residues within 4Å: Chain C: T.101, H.104, R.135, A.146, I.172, D.189, T.243, G.244 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:A.146 Hydrogen bonds: C:T.101, C:D.189 Salt bridges: C:H.104, C:R.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The structure of a functionally unknown protein (SO_1313) from Shewanella oneidensis MR-1. To be Published

Release Date

2008-04-22

Peptides

Anhydro-N-acetylmuramic acid kinase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Anhydro-N-acetylmuramic acid kinase

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