SMTL ID : 3cr3.5 (4 other biounits)

Structure of a transient complex between Dha-kinase subunits DhaM and DhaL from Lactococcus lactis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-oligomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.29, D.34, D.36 Ligands: MG.2, ADP.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.29, A:D.34, A:D.36, H2O.38 MG.2: 5 residues within 4Å: Chain A: D.34, D.36, R.161 Ligands: MG.1, ADP.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.34, A:D.36, H2O.11

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 22 residues within 4Å: Chain A: D.29, D.34, D.36, H.37, N.40, G.77, A.78, S.79, L.82, G.115, A.117, T.123, M.124, K.159, G.160, R.161, D.174, P.175, G.176, T.177 Ligands: MG.1, MG.2 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:D.36, A:N.40, A:A.78, A:S.79, A:G.115, A:T.123, A:D.174, A:G.176, A:T.177 Water bridges: A:D.29, A:D.29, A:D.34, A:G.115, A:R.161, A:R.161 Salt bridges: A:H.37, A:R.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zurbriggen, A. et al., X-ray Structures of the Three Lactococcus lactis Dihydroxyacetone Kinase Subunits and of a Transient Intersubunit Complex. J.Biol.Chem. (2008)

Release Date

2008-10-21

Peptides

PTS-dependent dihydroxyacetone kinase, ADP-binding subunit dhaL: A
PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit dhaM: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

PTS-dependent dihydroxyacetone kinase, ADP-binding subunit dhaL

PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit dhaM

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