SMTL ID : 3crq.1

Structure of tRNA Dimethylallyltransferase: RNA Modification through a Channel

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: T.19 Ligands: DPO.2 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.19, H2O.1, H2O.1, H2O.2

1 x DPO: DIPHOSPHATE(Non-covalent)

DPO.2: 9 residues within 4Å: Chain A: P.13, T.14, A.15, A.16, G.17, K.18, T.19, R.223 Ligands: MG.1 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:P.13, A:A.15, A:A.16, A:G.17, A:K.18, A:T.19, A:T.19 Water bridges: A:T.14, A:D.20, A:D.37, A:R.223 Salt bridges: A:K.18, A:K.18, A:R.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, W. et al., Structure of tRNA Dimethylallyltransferase: RNA Modification through a Channel. J.Mol.Biol. (2007)

Release Date

2008-04-29

Peptides

tRNA delta(2)-isopentenylpyrophosphate transferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

tRNA delta(2)-isopentenylpyrophosphate transferase

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