SMTL ID : 3crv.1

XPD_Helicase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 5 residues within 4Å: Chain A: K.369, Y.473, E.496, R.531, W.537 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Y.473, A:E.496 Water bridges: A:S.534, A:S.534, A:W.537 Salt bridges: A:K.369, A:K.369, A:K.501, A:R.531, A:R.531

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.2: 10 residues within 4Å: Chain A: K.84, C.88, L.89, I.100, C.102, C.105, L.107, K.108, C.137, Y.140 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.88, A:C.102, A:C.105, A:C.137

7 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.3: 5 residues within 4Å: Chain A: G.32, S.33, G.34, K.35, T.36 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.32, A:G.34, A:K.35, A:T.36 Water bridges: A:L.37 IPA.4: 1 residues within 4Å: Chain A: K.530 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.530, A:K.530 IPA.5: 3 residues within 4Å: Chain A: S.357, Y.358, K.542 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.542 Hydrogen bonds: A:Y.358 IPA.6: 2 residues within 4Å: Chain A: Q.391, W.526 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.526 Hydrogen bonds: A:Q.391 IPA.7: 4 residues within 4Å: Chain A: H.57, G.83, T.155, P.157 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.157 Water bridges: A:Y.158 IPA.8: 7 residues within 4Å: Chain A: S.368, K.369, R.373, I.471, Y.473, R.531 Ligands: GOL.10 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.473 Hydrogen bonds: A:R.531 IPA.9: 4 residues within 4Å: Chain A: R.55, A.450, E.451, G.452 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.55

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 10 residues within 4Å: Chain A: S.368, R.373, P.401, S.402, E.404, I.405, I.471, Y.473, P.475 Ligands: IPA.8 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.368, A:S.368, A:R.373, A:R.373, A:S.402, A:S.402

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, L. et al., XPD helicase structures and activities: insights into the cancer and aging phenotypes from XPD mutations. Cell(Cambridge,Mass.) (2008)

Release Date

2008-06-10

Peptides

XPD/Rad3 related DNA helicase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

XPD/Rad3 related DNA helicase

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