SMTL ID : 3csb.1

Crystal Structure of Monobody YSX1/Maltose Binding Protein Fusion Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

4 x MN: MANGANESE (II) ION(Non-functional Binders)(Non-covalent)

MN.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MN.2: 3 residues within 4Å: Chain A: D.285, S.304, E.308 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.285, A:E.308 MN.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MN.4: 1 residues within 4Å: Chain A: D.234 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.234

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 2 residues within 4Å: Chain A: D.85, K.303 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.85, A:K.303 EDO.6: 1 residues within 4Å: Ligands: PG4.8 No protein-ligand interaction detected (PLIP)

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.7: 5 residues within 4Å: Chain A: P.227, W.230, P.296, G.298, R.314 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.314, A:R.314 Water bridges: A:E.109, A:N.292

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.8: 4 residues within 4Å: Chain A: N.16, K.293, D.294 Ligands: EDO.6 No protein-ligand interaction detected (PLIP)

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.9: 8 residues within 4Å: Chain A: D.63, R.64, M.328, P.329, I.331, M.334, S.335, W.338 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.64, A:R.64, A:S.335 Water bridges: A:W.338

9 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.10: 4 residues within 4Å: Chain A: V.242, T.243, P.313, A.316 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.243 Water bridges: A:V.242 PEG.11: 4 residues within 4Å: Chain A: A.395, Y.396, S.398, G.425 No protein-ligand interaction detected (PLIP) PEG.12: 5 residues within 4Å: Chain A: E.128, A.188, F.192, F.248, K.249 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.128, A:E.128, A:K.249 Water bridges: A:D.195 PEG.13: 5 residues within 4Å: Chain A: Q.84, P.89, W.92, R.96, L.101 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.89 PEG.14: 4 residues within 4Å: Chain A: A.69, L.74, E.76, K.100 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.69, A:E.76, A:E.76, A:K.100 Water bridges: A:E.76 PEG.15: 10 residues within 4Å: Chain A: K.4, V.6, A.49, T.51, G.54, P.55, D.56, N.265, A.267, N.270 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.4, A:A.49, A:N.270 PEG.16: 3 residues within 4Å: Chain A: Y.281, T.284, E.286 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.286, A:E.286 PEG.17: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) PEG.18: 6 residues within 4Å: Chain A: K.13, A.61, A.107, E.109, L.260, L.297 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.13, A:L.297 Water bridges: A:K.13, A:A.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gilbreth, R.N. et al., A Dominant Conformational Role for Amino Acid Diversity in Minimalist Protein-Protein Interfaces. J.Mol.Biol. (2008)

Release Date

2008-07-22

Peptides

Maltose-binding protein Monobody YSX1 Fusion: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Maltose-binding protein Monobody YSX1 Fusion