SMTL ID : 3cvw.1

Drosophila melanogaster (6-4) photolyase H365N mutant bound to ds DNA with a T-T (6-4) photolesion and cofactor F0

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 29 residues within 4Å: Chain A: T.8 Chain C: F.267, K.269, T.281, T.282, V.283, L.284, S.285, L.288, Q.322, L.323, W.325, R.326, Y.329, W.385, N.388, R.391, H.392, A.395, F.414, L.418, D.420, Q.421, D.422, L.425, N.426, N.429, W.430, L.433 22 PLIP interactions: 22 interactions with chain C Hydrophobic interactions: C:R.391, C:A.395, C:F.414, C:F.414, C:N.429, C:W.430, C:L.433 Hydrogen bonds: C:T.281, C:T.282, C:V.283, C:L.284, C:S.285, C:S.285, C:N.388, C:R.391, C:D.420, C:D.420, C:D.422, C:N.429, C:N.429 Salt bridges: C:K.269 pi-Cation interactions: C:R.391

1 x FO1: 1-deoxy-1-(8-hydroxy-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-D-ribitol(Non-covalent)

FO1.2: 17 residues within 4Å: Chain C: R.36, K.37, F.67, I.68, L.69, D.70, I.73, M.77, R.83, L.87, D.133, E.135, S.138, R.141, K.289, F.290, Q.421 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:F.67, C:I.73 Hydrogen bonds: C:I.68, C:D.70, C:R.83, C:R.83, C:S.138, C:R.141, C:R.141, C:K.289, C:K.289, C:Q.421

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maul, M.J. et al., Structure and mechanism of a cofactor f0 accelerated (6-4) photolyase from the fruit fly. To be Published

Release Date

2009-10-13

Peptides

RE11660p: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

RE11660p