SMTL ID : 3cwz.1

Structure of RAB6(GTP)-R6IP1 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: K.19, T.20, T.38, D.61, T.62 Ligands: GTP.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:T.20, A:T.38, A:D.61, A:D.61

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 26 residues within 4Å: Chain A: Q.15, S.16, V.17, G.18, K.19, T.20, S.21, F.31, D.32, N.33, T.34, Y.35, Q.36, A.37, T.38, T.62, A.63, G.64, N.119, K.120, D.122, L.123, S.149, A.150, K.151 Ligands: MG.1 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:S.16, A:V.17, A:G.18, A:K.19, A:T.20, A:T.20, A:S.21, A:S.21, A:D.32, A:T.38, A:T.38, A:G.64, A:N.119, A:K.120, A:K.120, A:A.150, A:K.151 Water bridges: A:K.151 Salt bridges: A:K.19, A:K.19, A:D.122 pi-Stacking: A:F.31, A:F.31 pi-Cation interactions: A:K.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Recacha, R. et al., Structural basis for recruitment of Rab6-interacting protein 1 to Golgi via a RUN domain. Structure (2009)

Release Date

2008-11-18

Peptides

Ras-related protein Rab-6A: A
Rab6-interacting protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ras-related protein Rab-6A

Rab6-interacting protein 1