SMTL ID : 3cxy.1

Crystal structure of the cytochrome P450 CYP121 P346L mutant from M. tuberculosis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: P.330, N.331, P.332, T.333, S.334 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.333, A:S.334 Water bridges: A:T.333, A:T.333 SO4.2: 2 residues within 4Å: Chain A: S.12, R.14 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.12 Water bridges: A:A.13, A:R.14, A:R.14 SO4.3: 5 residues within 4Å: Chain A: R.58, S.61, M.62, K.63, H.343 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.61, A:M.62, A:K.63 Water bridges: A:S.61 Salt bridges: A:R.58, A:H.343 SO4.5: 5 residues within 4Å: Chain B: P.330, N.331, P.332, T.333, S.334 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.333, B:S.334 SO4.6: 2 residues within 4Å: Chain B: S.12, R.14 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.12 Water bridges: B:A.13, B:R.14, B:R.14 SO4.7: 5 residues within 4Å: Chain B: R.58, S.61, M.62, K.63, H.343 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.61, B:M.62, B:K.63 Water bridges: B:S.61 Salt bridges: B:R.58, B:H.343

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.4: 20 residues within 4Å: Chain A: M.62, M.86, H.146, F.230, G.234, S.237, T.238, F.241, L.274, F.280, L.284, R.286, L.309, A.337, F.338, G.339, Q.342, H.343, C.345, G.347 18 PLIP interactions: 17 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:F.230, A:F.230, A:T.238, A:F.241, A:L.274, A:F.280, A:F.280, A:L.309, A:F.338 Water bridges: A:M.86, A:R.95, A:P.285, A:R.286 Salt bridges: A:R.286, A:H.343 pi-Stacking: A:F.338 Metal complexes: A:C.345, H2O.4 HEM.8: 20 residues within 4Å: Chain B: M.62, M.86, H.146, F.230, G.234, S.237, T.238, F.241, L.274, F.280, L.284, R.286, L.309, A.337, F.338, G.339, Q.342, H.343, C.345, G.347 18 PLIP interactions: 17 interactions with chain B, 1 Ligand-Water interactions Hydrophobic interactions: B:F.230, B:F.230, B:T.238, B:F.241, B:L.274, B:F.280, B:F.280, B:L.309, B:F.338 Water bridges: B:M.86, B:R.95, B:P.285, B:R.286 Salt bridges: B:R.286, B:H.343 pi-Stacking: B:F.338 Metal complexes: B:C.345, H2O.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McLean, K.J. et al., Characterization of active site structure in CYP121. TO BE PUBLISHED

Release Date

2008-09-23

Peptides

Cytochrome P450 121: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Cytochrome P450 121