- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x NAG- NAG- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 10 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
CA.3: 6 residues within 4Å:- Chain A: D.212, G.216, D.242, G.260, N.262, G.263
6 PLIP interactions:5 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.212, A:G.216, A:D.242, A:G.260, A:N.262, H2O.2
CA.4: 4 residues within 4Å:- Chain A: D.294, N.296, D.302, S.304
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.294, A:D.294, A:D.302, H2O.2, H2O.4
CA.5: 1 residues within 4Å:- Ligands: CA.28
No protein-ligand interaction detected (PLIP)CA.15: 4 residues within 4Å:- Chain B: D.294, N.296, D.302, S.304
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.294, B:D.294, B:D.302, H2O.16, H2O.19
CA.16: 6 residues within 4Å:- Chain B: D.212, G.216, D.242, G.260, N.262, G.263
6 PLIP interactions:5 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.212, B:G.216, B:D.242, B:G.260, B:N.262, H2O.18
CA.26: 6 residues within 4Å:- Chain C: D.212, G.216, D.242, G.260, N.262, G.263
6 PLIP interactions:5 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.212, C:G.216, C:D.242, C:G.260, C:N.262, H2O.31
CA.27: 4 residues within 4Å:- Chain C: D.294, N.296, D.302, S.304
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.294, C:D.294, C:D.302, H2O.31, H2O.33
CA.28: 1 residues within 4Å:- Ligands: CA.5
No protein-ligand interaction detected (PLIP)CA.38: 4 residues within 4Å:- Chain D: D.294, N.296, D.302, S.304
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.294, D:D.294, D:D.302, H2O.45, H2O.48
CA.39: 6 residues within 4Å:- Chain D: D.212, G.216, D.242, G.260, N.262, G.263
6 PLIP interactions:5 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.212, D:G.216, D:D.242, D:G.260, D:N.262, H2O.47
- 10 x ACT: ACETATE ION(Non-functional Binders)
ACT.6: 7 residues within 4Å:- Chain A: Q.168, A.169, Y.171, L.187, N.188, A.189, P.190
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:Q.168
- Hydrogen bonds: A:Q.168, A:A.189
- Water bridges: A:R.138, A:E.186, A:E.186
ACT.7: 6 residues within 4Å:- Chain A: R.143, T.144, E.146, E.196
- Ligands: ACT.8, PO4.9
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:E.146
- Hydrogen bonds: A:E.146, A:E.146
ACT.8: 7 residues within 4Å:- Chain A: R.70, W.97, S.98, I.141, R.143
- Ligands: ACT.7, PO4.9
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:W.97, A:R.143
- Water bridges: A:R.70
- Salt bridges: A:R.70
ACT.17: 7 residues within 4Å:- Chain B: R.70, W.97, S.98, R.143
- Ligands: ACT.18, GOL.20, GOL.23
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:W.97, B:R.143
- Water bridges: B:E.196
- Salt bridges: B:R.70
ACT.18: 6 residues within 4Å:- Chain B: T.144, E.146, E.196
- Ligands: ACT.17, GOL.20, GOL.23
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:E.146
- Hydrogen bonds: B:E.146, B:E.196
ACT.29: 7 residues within 4Å:- Chain C: Q.168, A.169, Y.171, L.187, N.188, A.189, P.190
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:Q.168
- Hydrogen bonds: C:Q.168, C:A.189
- Water bridges: C:R.138
ACT.30: 6 residues within 4Å:- Chain C: R.143, T.144, E.146, E.196
- Ligands: ACT.31, PO4.32
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:E.146
- Hydrogen bonds: C:E.146, C:E.196
ACT.31: 7 residues within 4Å:- Chain C: R.70, W.97, S.98, I.141, R.143
- Ligands: ACT.30, PO4.32
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:W.97, C:R.143
- Salt bridges: C:R.70
ACT.40: 7 residues within 4Å:- Chain D: R.70, W.97, S.98, R.143
- Ligands: ACT.41, GOL.43, GOL.46
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:W.97, D:R.143
- Salt bridges: D:R.70
ACT.41: 6 residues within 4Å:- Chain D: T.144, E.146, E.196
- Ligands: ACT.40, GOL.43, GOL.46
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:E.146
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.9: 8 residues within 4Å:- Chain A: R.143, S.165, E.195, E.196, R.211, N.213
- Ligands: ACT.7, ACT.8
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.195, A:E.195
- Water bridges: A:R.211
- Salt bridges: A:R.211
PO4.32: 8 residues within 4Å:- Chain C: R.143, S.165, E.195, E.196, R.211, N.213
- Ligands: ACT.30, ACT.31
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:E.195, C:E.195
- Water bridges: C:E.196, C:E.196, C:R.211
- Salt bridges: C:R.211
- 20 x GOL: GLYCEROL(Non-functional Binders)
GOL.10: 6 residues within 4Å:- Chain A: Y.88, N.89, S.90
- Chain D: P.80, E.83, N.89
Ligand excluded by PLIPGOL.11: 5 residues within 4Å:- Chain A: P.11, I.12, Y.271, W.276, W.293
Ligand excluded by PLIPGOL.12: 6 residues within 4Å:- Chain A: S.8, L.9, D.202, R.270, Y.271, D.272
Ligand excluded by PLIPGOL.13: 7 residues within 4Å:- Chain A: P.80, E.83, N.89
- Chain B: Y.88, N.89, S.90, R.91
Ligand excluded by PLIPGOL.14: 5 residues within 4Å:- Chain A: G.249, T.250, T.301, D.302, S.303
Ligand excluded by PLIPGOL.19: 5 residues within 4Å:- Chain B: P.11, I.12, Y.271, W.276, W.293
Ligand excluded by PLIPGOL.20: 9 residues within 4Å:- Chain B: R.143, S.165, E.195, E.196, R.211, N.213, Y.320
- Ligands: ACT.17, ACT.18
Ligand excluded by PLIPGOL.21: 5 residues within 4Å:- Chain B: D.202, K.205, M.207, S.223, R.270
Ligand excluded by PLIPGOL.22: 7 residues within 4Å:- Chain B: S.8, L.9, D.202, T.203, R.270, Y.271, D.272
Ligand excluded by PLIPGOL.23: 9 residues within 4Å:- Chain B: R.36, E.37, L.52, D.69, R.74, W.97, Y.320
- Ligands: ACT.17, ACT.18
Ligand excluded by PLIPGOL.33: 6 residues within 4Å:- Chain B: P.80, E.83, N.89
- Chain C: Y.88, N.89, S.90
Ligand excluded by PLIPGOL.34: 5 residues within 4Å:- Chain C: P.11, I.12, Y.271, W.276, W.293
Ligand excluded by PLIPGOL.35: 6 residues within 4Å:- Chain C: S.8, L.9, D.202, R.270, Y.271, D.272
Ligand excluded by PLIPGOL.36: 7 residues within 4Å:- Chain C: P.80, E.83, N.89
- Chain D: Y.88, N.89, S.90, R.91
Ligand excluded by PLIPGOL.37: 5 residues within 4Å:- Chain C: G.249, T.250, T.301, D.302, S.303
Ligand excluded by PLIPGOL.42: 5 residues within 4Å:- Chain D: P.11, I.12, Y.271, W.276, W.293
Ligand excluded by PLIPGOL.43: 9 residues within 4Å:- Chain D: R.143, S.165, E.195, E.196, R.211, N.213, Y.320
- Ligands: ACT.40, ACT.41
Ligand excluded by PLIPGOL.44: 5 residues within 4Å:- Chain D: D.202, K.205, M.207, S.223, R.270
Ligand excluded by PLIPGOL.45: 7 residues within 4Å:- Chain D: S.8, L.9, D.202, T.203, R.270, Y.271, D.272
Ligand excluded by PLIPGOL.46: 9 residues within 4Å:- Chain D: R.36, E.37, L.52, D.69, R.74, W.97, Y.320
- Ligands: ACT.40, ACT.41
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhu, X. et al., Structure determination of the 1918 H1N1 neuraminidase from a crystal with lattice-translocation defects. Acta Crystallogr.,Sect.D (2008)
- Release Date
- 2008-08-05
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x NAG- NAG- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 10 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
- 10 x ACT: ACETATE ION(Non-functional Binders)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 20 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhu, X. et al., Structure determination of the 1918 H1N1 neuraminidase from a crystal with lattice-translocation defects. Acta Crystallogr.,Sect.D (2008)
- Release Date
- 2008-08-05
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B