SMTL ID : 3cyj.1

Crystal structure of a mandelate racemase/muconate lactonizing enzyme-like protein from Rubrobacter xylanophilus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-octamer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 7 residues within 4Å: Chain A: D.194, N.196, E.221, E.222, E.249, H.297 Ligands: GOL.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.194, A:E.249 NA.3: 6 residues within 4Å: Chain C: D.194, N.196, E.221, E.222, E.249 Ligands: GOL.4 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.196 NA.5: 7 residues within 4Å: Chain E: D.194, N.196, E.221, E.222, E.249, H.297 Ligands: GOL.6 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:E.249 NA.7: 6 residues within 4Å: Chain G: D.194, N.196, E.221, E.222, E.249 Ligands: GOL.8 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:N.196

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: D.26, W.31, K.166, N.196, H.297, F.319 Chain B: R.90, N.91 Ligands: NA.1 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.90, B:N.91, B:N.91, A:K.166, A:H.297 GOL.4: 10 residues within 4Å: Chain C: D.26, W.31, K.166, D.194, N.196, H.297, F.319 Chain D: R.90, N.91 Ligands: NA.3 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:K.166, C:N.196, C:H.297, D:R.90, D:N.91 GOL.6: 9 residues within 4Å: Chain E: D.26, W.31, K.166, N.196, H.297, F.319 Chain F: R.90, N.91 Ligands: NA.5 6 PLIP interactions: 3 interactions with chain E, 3 interactions with chain F Hydrogen bonds: E:D.26, E:K.166, E:H.297, F:R.90, F:N.91, F:N.91 GOL.8: 10 residues within 4Å: Chain G: D.26, W.31, K.166, D.194, N.196, H.297, F.319 Chain H: R.90, N.91 Ligands: NA.7 6 PLIP interactions: 2 interactions with chain H, 4 interactions with chain G Hydrogen bonds: H:R.90, H:N.91, G:D.26, G:K.166, G:N.196, G:H.297

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bonanno, J.B. et al., Crystal structure of a mandelate racemase/muconate lactonizing enzyme-like protein from Rubrobacter xylanophilus. To be Published

Release Date

2008-05-06

Peptides

Mandelate racemase/muconate lactonizing enzyme-like protein: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

Mandelate racemase/muconate lactonizing enzyme-like protein