SMTL ID : 3cyn.4 (3 other biounits)

The structure of human GPX8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.140, F.160, R.162 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.140, A:R.162 SO4.3: 6 residues within 4Å: Chain A: Q.60, R.64 Chain B: Q.60, R.64 Chain C: Q.60, R.64 8 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B, 2 interactions with chain C Hydrogen bonds: A:Q.60, B:Q.60, C:Q.60 Water bridges: A:R.64, B:R.64 Salt bridges: A:R.64, B:R.64, C:R.64 SO4.4: 3 residues within 4Å: Chain A: W.144 Chain B: W.144 Chain C: W.144 1 PLIP interactions: 1 interactions with chain B Water bridges: B:D.58 SO4.5: 3 residues within 4Å: Chain B: K.140, F.160, R.162 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.140, B:R.162 SO4.6: 4 residues within 4Å: Chain B: N.152, P.153, L.177, Q.180 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.152, B:Q.180 SO4.8: 3 residues within 4Å: Chain C: K.140, F.160, R.162 2 PLIP interactions: 2 interactions with chain C Salt bridges: C:K.140, C:R.162

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: P.98, S.99, H.118, K.119 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.99 Water bridges: A:H.118, A:K.119, A:K.119 GOL.7: 4 residues within 4Å: Chain B: P.98, S.99, H.118, K.119 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.99 Water bridges: B:H.118 GOL.9: 4 residues within 4Å: Chain C: P.98, S.99, H.118, K.119 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.99, C:H.118, C:K.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kavanagh, K.L. et al., The structure of human GPX8. To be Published

Release Date

2008-08-12

Peptides

Probable glutathione peroxidase 8: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Probable glutathione peroxidase 8

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