SMTL ID : 3cz6.3 (2 other biounits)

Crystal Structure of the Rap1 C-terminus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 8 residues within 4Å: Chain A: F.80, S.83, I.84, C.87, Y.98, N.108, P.109, W.117 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.80, A:I.84 Hydrogen bonds: A:S.83 Water bridges: A:N.108, A:H.119 MPD.2: 6 residues within 4Å: Chain A: I.12, Y.13, I.16, K.104 Chain B: R.134, K.138 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:Y.13, A:Y.13, A:I.16 Hydrogen bonds: A:K.104, A:K.104, B:R.134, B:K.138 MPD.5: 7 residues within 4Å: Chain B: F.80, S.83, I.84, C.87, Y.98, P.109, W.117 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.98

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3: 4 residues within 4Å: Chain B: L.34, C.71, R.77, K.78 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.78 Salt bridges: B:R.77 MES.4: 2 residues within 4Å: Chain B: E.59, Q.62 2 PLIP interactions: 2 interactions with chain B Water bridges: B:Q.62 Salt bridges: B:E.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feeser, E.A. et al., Structural and functional studies of the Rap1 C-terminus reveal novel separation-of-function mutants. J.Mol.Biol. (2008)

Release Date

2008-05-20

Peptides

DNA-binding protein RAP1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA-binding protein RAP1

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