SMTL ID : 3czh.1 (1 other biounit)

Crystal structure of CYP2R1 in complex with vitamin D2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x GLC- GLC- GLC- GLC- GLC- GLC- GLC: Cycloheptakis-(1-4)-(alpha-D-glucopyranose)(Non-covalent)

GLC-GLC-GLC-GLC-GLC-GLC-GLC.1: 3 residues within 4Å: Chain A: P.213, F.214, G.215 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.215 Water bridges: A:G.215

10 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 3 residues within 4Å: Chain A: A.198, S.199, K.216 No protein-ligand interaction detected (PLIP) UNX.3: 2 residues within 4Å: Chain A: R.111, H.421 No protein-ligand interaction detected (PLIP) UNX.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) UNX.5: 1 residues within 4Å: Chain A: Y.120 No protein-ligand interaction detected (PLIP) UNX.6: 5 residues within 4Å: Chain A: N.159, T.175, Y.176, D.178, Q.182 No protein-ligand interaction detected (PLIP) UNX.7: 1 residues within 4Å: Chain A: W.326 No protein-ligand interaction detected (PLIP) UNX.8: 2 residues within 4Å: Chain A: L.339, M.432 No protein-ligand interaction detected (PLIP) UNX.9: 3 residues within 4Å: Chain A: D.178, T.179, D.180 No protein-ligand interaction detected (PLIP) UNX.10: 5 residues within 4Å: Chain A: V.349, P.350, L.351, G.352, M.461 No protein-ligand interaction detected (PLIP) UNX.11: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.12: 26 residues within 4Å: Chain A: R.83, L.98, L.99, W.107, R.111, F.118, T.165, L.281, A.284, G.285, T.288, T.289, V.292, V.349, I.353, H.355, L.378, P.414, F.415, S.416, R.420, C.422, L.423, G.424, A.428, M.432 22 PLIP interactions: 22 interactions with chain A, Hydrophobic interactions: A:L.98, A:F.118, A:T.165, A:L.281, A:A.284, A:V.292, A:V.349, A:V.349, A:L.378, A:F.415, A:F.415, A:L.423 Hydrogen bonds: A:L.99, A:S.416, A:S.416 Water bridges: A:I.353 Salt bridges: A:R.83, A:R.83, A:R.111, A:H.355, A:R.420 Metal complexes: A:C.422

1 x D2V: (3S,5Z,7E,22E)-9,10-secoergosta-5,7,10,22-tetraen-3-ol(Non-covalent)

D2V.13: 18 residues within 4Å: Chain A: M.92, T.93, N.100, F.188, V.192, A.195, A.224, V.227, Y.228, L.231, F.276, E.280, I.283, T.288, V.349, I.353, M.461, T.462 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:T.93, A:F.188, A:F.188, A:V.192, A:A.195, A:L.231, A:E.280, A:I.283, A:T.288, A:V.349, A:I.353, A:T.462 Hydrogen bonds: A:Y.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Strushkevich, N.V. et al., Crystal structure of CYP2R1 in complex with vitamin D2. To be Published

Release Date

2008-08-05

Peptides

Cytochrome P450 2R1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450 2R1

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