SMTL ID : 3czq.1

Crystal structure of putative polyphosphate kinase 2 from Sinorhizobium meliloti

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

homo-tetramer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: A.96, A.97, G.98, K.99, G.100, R.211, K.220 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:A.96, A:G.98, A:K.99, A:G.100, A:K.220 Water bridges: A:R.211, A:R.211

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 4 residues within 4Å: Chain C: W.79, K.85, H.191, D.277 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:K.85, C:K.85, C:D.277 FMT.3: 5 residues within 4Å: Chain D: A.96, A.97, G.98, K.99, R.211 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:A.96, D:G.98, D:K.99, D:R.211, D:R.211 Water bridges: D:G.100, D:G.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nocek, B. et al., Polyphosphate-dependent synthesis of ATP and ADP by the family-2 polyphosphate kinases in bacteria. Proc.Natl.Acad.Sci.USA (2008)

Release Date

2008-07-01

Peptides

Putative polyphosphate kinase 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Putative polyphosphate kinase 2