SMTL ID : 3czs.1

Golgi alpha-mannosidase II (D204A nucleophile mutant)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.194 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.194, A:N.194, A:N.194

1 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.2: 13 residues within 4Å: Chain A: H.90, D.92, W.95, F.206, R.228, Y.269, D.341, W.415, H.471, D.472, Y.727, R.876 Ligands: ZN.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.228, A:Y.269, A:D.341, A:D.472, A:Y.727 Water bridges: A:R.228

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 6 residues within 4Å: Chain A: H.90, D.92, A.204, H.471, D.472 Ligands: MAN.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.90, A:D.92, A:H.471

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 7 residues within 4Å: Chain A: K.63, Q.64, Y.267, H.273, P.279, W.299, R.410 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:K.63, A:K.63, A:Y.267 Water bridges: A:K.63, A:Q.64, A:H.273

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shah, N. et al., Golgi alpha-mannosidase II cleaves two sugars sequentially in the same catalytic site. Proc.Natl.Acad.Sci.Usa (2008)

Release Date

2008-06-24

Peptides

Alpha-mannosidase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-mannosidase 2

Related Entries With Identical Sequence