SMTL ID : 3d0k.1 (1 other biounit)

Crystal structure of the LpqC, poly(3-hydroxybutyrate) depolymerase from Bordetella parapertussis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 1 residues within 4Å: Chain A: N.130 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain A: P.228, R.232 Ligand excluded by PLIP

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 9 residues within 4Å: Chain A: V.63, S.148, A.149, Q.152, P.174, G.175, N.223, P.225, R.237 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.149, A:Q.152, A:G.175 Water bridges: A:N.102, A:R.237 Salt bridges: A:R.237 SO4.4: 3 residues within 4Å: Chain A: T.108, A.110, N.112 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.108 Water bridges: A:A.109, A:N.112 SO4.5: 7 residues within 4Å: Chain A: G.62, V.63, L.64, Y.70, H.147, S.148, H.271 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.62, A:V.63, A:S.148 Water bridges: A:L.64, A:L.64, A:N.66, A:S.148, A:A.149 Salt bridges: A:H.147, A:H.271 SO4.6: 3 residues within 4Å: Chain A: H.21, A.22, Y.48 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.22 Water bridges: A:R.46 SO4.7: 3 residues within 4Å: Chain A: G.97, V.98, E.99 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.98 Water bridges: A:G.97, A:G.97 SO4.8: 2 residues within 4Å: Chain A: D.291, A.292 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.292 Water bridges: A:A.293

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.9: 5 residues within 4Å: Chain A: R.65, N.66, G.67, A.68, D.69 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.68, A:D.69 Water bridges: A:N.43, A:N.43, A:D.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of the LpqC, Poly(3-hydroxybutyrate) Depolymerase from Bordetella parapertussis. To be Published

Release Date

2008-07-01

Peptides

Putative poly(3-hydroxybutyrate) depolymerase LpqC: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative poly(3-hydroxybutyrate) depolymerase LpqC

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