SMTL ID : 3d12.1 (2 other biounits)

Crystal Structures of Nipah Virus G Attachment Glycoprotein in Complex with its Receptor Ephrin-B3

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 3.01 Å
Oligo State
hetero-2-2-mer
Ligands
1 x NAG- NAG- BMA- BMA- MAN: beta-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x LXZ- NGA- GL0- BGC- GLC- BGC- GLC: beta-D-glucopyranose-(1-3)-[alpha-D-glucopyranose-(1-6)]beta-D-gulopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-[beta-D-glucopyranose-(1-3)][alpha-D-glucopyranose-(1-6)]2-acetamido-2-deoxy-alpha-D-idopyranose(Non-covalent)
2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Non-functional Binders)
2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Non-functional Binders)
22 x SO4: SULFATE ION(Non-covalent)(Post Translational Modification)(Non-functional Binders)
1 x NAG- NAG- BMA- BGC- MAN: beta-D-glucopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)
1 x LXB- NGZ- GL0- BGC- GLC- BGC- GXL: beta-D-glucopyranose-(1-3)-[alpha-D-glucopyranose-(1-6)]beta-D-gulopyranose-(1-4)-2-acetamido-2-deoxy-alpha-L-glucopyranose-(1-4)-[beta-D-glucopyranose-(1-3)][alpha-L-galactopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-gulopyranose(Non-functional Binders)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Xu, K. et al., Host cell recognition by the henipaviruses: crystal structures of the Nipah G attachment glycoprotein and its complex with ephrin-B3. Proc.Natl.Acad.Sci.USA (2008)
Release Date
2008-08-19
Peptides
Hemagglutinin-neuraminidase: AC
Ephrin-B3: BD
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
C
D
B
B
D
E

Hemagglutinin-neuraminidase

Toggle Identical (AC)

Ephrin-B3

Toggle Identical (BD)

Related Entries With Identical Sequence

3d11.1 | 3d12.2 | 3d12.3