SMTL ID : 3d19.1

Crystal structure of a conserved metalloprotein from Bacillus cereus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-hexamer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: H.117, E.121, I.154, H.158, E.252 Ligands: FE.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.117, A:E.121, A:H.158, A:E.252, H2O.1 MG.3: 6 residues within 4Å: Chain B: H.117, E.121, I.154, H.158, E.252 Ligands: FE.4 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.117, B:E.121, B:H.158, B:E.252, H2O.3 MG.5: 6 residues within 4Å: Chain C: H.117, E.121, I.154, H.158, E.252 Ligands: FE.6 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.117, C:E.121, C:H.158, C:E.252, H2O.3 MG.7: 5 residues within 4Å: Chain D: H.117, E.121, H.158, E.252 Ligands: FE.8 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.117, D:E.121, D:H.158, D:E.252, H2O.5 MG.9: 5 residues within 4Å: Chain E: H.117, E.121, H.158, E.252 Ligands: FE.10 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:H.117, E:E.121, E:H.158, E:E.252, H2O.5 MG.11: 6 residues within 4Å: Chain F: H.117, E.121, I.154, H.158, E.252 Ligands: FE.12 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:H.117, F:E.121, F:H.158, F:E.252, H2O.5

6 x FE: FE (III) ION(Non-covalent)

FE.2: 6 residues within 4Å: Chain A: I.26, H.30, E.121, H.248, E.252 Ligands: MG.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.30, A:E.121, A:H.248, A:E.252, H2O.1 FE.4: 6 residues within 4Å: Chain B: I.26, H.30, E.121, H.248, E.252 Ligands: MG.3 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.30, B:E.121, B:H.248, B:E.252, H2O.3 FE.6: 6 residues within 4Å: Chain C: I.26, H.30, E.121, H.248, E.252 Ligands: MG.5 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.30, C:E.121, C:H.248, C:E.252, H2O.3 FE.8: 6 residues within 4Å: Chain D: I.26, H.30, E.121, H.248, E.252 Ligands: MG.7 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.30, D:E.121, D:H.248, D:E.252, H2O.5 FE.10: 6 residues within 4Å: Chain E: I.26, H.30, E.121, H.248, E.252 Ligands: MG.9 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:H.30, E:E.121, E:E.121, E:H.248, H2O.5 FE.12: 6 residues within 4Å: Chain F: I.26, H.30, E.121, H.248, E.252 Ligands: MG.11 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:H.30, F:E.121, F:H.248, F:E.252, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bonanno, J.B. et al., Crystal structure of a conserved metalloprotein from Bacillus cereus. To be Published

Release Date

2008-07-08

Peptides

Conserved metalloprotein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Conserved metalloprotein