SMTL ID : 3d3d.1 (1 other biounit)

Bacteriophage lambda lysozyme complexed with a chitohexasaccharide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- NAG- NAG- NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-NAG-NAG-NAG-NAG.1: 15 residues within 4Å: Chain A: E.19, Y.67, Q.68, L.69, L.70, W.73, A.76, Y.77, Q.98, E.101, N.122, I.123, W.124, A.125, Y.132 No protein-ligand interaction detected (PLIP)

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: V.2, E.3, R.8, K.100, L.105 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.3 Salt bridges: A:R.8, A:K.100 SO4.3: 5 residues within 4Å: Chain A: W.17, F.135, H.137, K.138, S.141 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.138, A:S.141 Salt bridges: A:H.137, A:K.138 SO4.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leung, A.K.W. et al., Crystal structure of the lytic transglycosylase from bacteriophage lambda in complex with hexa-N-acetylchitohexaose. Biochemistry (2001)

Release Date

2008-09-09

Peptides

Lysozyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysozyme

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