SMTL ID : 3d3h.1

Crystal structure of a complex of the peptidoglycan glycosyltransferase domain from Aquifex aeolicus and neryl moenomycin A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

homo-dimer

Ligands

2 x M4O: (2R)-3-{[(S)-{[(2R,3R,4R,5S,6S)-3-{[(2S,3R,4R,5S,6R)-3-(acetylamino)-5-{[(2S,3R,4R,5S,6R)-3-(acetylamino)-5-{[(2R,3R,4S,5R,6S)-6-carbamoyl-3,4,5-trihydroxytetrahydro-2H-pyran-2-yl]oxy}-4-hydroxy-6-methyltetrahydro-2H-pyran-2-yl]oxy}-4-hydroxy-6-({[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}methyl)tetrahydro-2H-pyran-2-yl]oxy}-6-carbamoyl-4-(carbamoyloxy)-5-hydroxy-5-methyltetrahydro-2H-pyran-2-yl]oxy}(hydroxy)phosphoryl]oxy}-2-{[(2Z)-3,7-dimethylocta-2,6-dien-1-yl]oxy}propanoic acid(Non-covalent)

M4O.1: 16 residues within 4Å: Chain A: E.40, G.71, S.73, Q.78, K.81, N.82, R.89, T.90, L.91, K.94, I.121, P.157, K.158, A.159, P.160, A.161 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.91, A:I.121 Hydrogen bonds: A:E.40, A:S.73, A:K.81, A:N.82, A:R.89, A:Y.128, A:P.157, A:A.161 Water bridges: A:S.73, A:Y.122, A:P.157 Salt bridges: A:K.81, A:K.81, A:K.81, A:R.89, A:K.94 M4O.2: 16 residues within 4Å: Chain B: E.40, G.71, S.73, Q.78, K.81, N.82, R.89, T.90, L.91, K.94, I.121, P.157, K.158, A.159, P.160, A.161 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:L.91, B:I.121 Hydrogen bonds: B:E.40, B:S.73, B:K.81, B:N.82, B:R.89, B:Y.128, B:P.157, B:A.161 Water bridges: B:S.73, B:Y.122, B:P.157 Salt bridges: B:K.81, B:K.81, B:K.81, B:R.89, B:K.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuan, Y. et al., Structural analysis of the contacts anchoring moenomycin to peptidoglycan glycosyltransferases and implications for antibiotic design. Acs Chem.Biol. (2008)

Release Date

2008-07-22

Peptides

Penicillin-insensitive transglycosylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Penicillin-insensitive transglycosylase

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