SMTL ID : 3d3i.3 (2 other biounits)

Crystal structural of Escherichia coli K12 YgjK, a glucosidase belonging to glycoside hydrolase family 63

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.432, N.434, N.436, V.438, E.440, E.550 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.432, A:V.438, A:E.440, A:E.550

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: P.309, F.316, W.322, D.325, K.392, F.743, W.745 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.392 GOL.3: 4 residues within 4Å: Chain A: W.322, D.369, K.392, W.497 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.369, A:K.392, A:K.392

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kurakata, Y. et al., Structural insights into the substrate specificity and function of Escherichia coli K12 YgjK, a glucosidase belonging to the glycoside hydrolase family 63. J.Mol.Biol. (2008)

Release Date

2008-06-03

Peptides

Uncharacterized protein ygjK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Uncharacterized protein ygjK

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