SMTL ID : 3d3s.1 (1 other biounit)

Crystal structure of L-2,4-diaminobutyric acid acetyltransferase from Bordetella parapertussis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

homo-dimer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: S.74, P.75, G.76, R.78 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.74, A:G.76 Water bridges: A:R.78 Salt bridges: A:R.78 SO4.2: 2 residues within 4Å: Chain A: A.141, R.144 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.113, A:R.144 Salt bridges: A:R.144 SO4.3: 4 residues within 4Å: Chain A: R.107, G.108, H.109, R.110 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.108, A:H.109, A:R.110 Water bridges: A:A.106, A:L.111 Salt bridges: A:R.107 SO4.6: 6 residues within 4Å: Chain B: R.110, L.111, G.112, R.113, T.145 Ligands: SO4.7 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.112, B:R.113 Water bridges: B:T.145 Salt bridges: B:R.113 SO4.7: 6 residues within 4Å: Chain B: V.102, R.107, G.108, H.109, R.110 Ligands: SO4.6 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.108, B:H.109, B:R.110 Water bridges: B:L.111, B:L.111 SO4.8: 5 residues within 4Å: Chain B: R.26, S.74, P.75, G.76, R.78 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.26, B:S.74, B:S.74, B:G.76 Water bridges: B:R.78, B:R.78 Salt bridges: B:R.78 SO4.9: 5 residues within 4Å: Chain B: L.29, R.30, P.31, H.118, R.122 4 PLIP interactions: 4 interactions with chain B Water bridges: B:H.118, B:E.121 Salt bridges: B:H.118, B:R.122

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: A.39, L.43, E.46, I.79, D.80, H.103, R.105 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.39, A:E.46, A:I.79, A:R.105, A:R.105 Water bridges: A:Q.42 GOL.5: 5 residues within 4Å: Chain A: D.138, N.139, Q.140, A.141, S.142 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.139, A:Q.140, A:A.141, A:S.142 GOL.10: 3 residues within 4Å: Chain B: R.33, R.34, N.35 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.33, B:N.35, B:N.35 Water bridges: B:R.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal structure of L-2,4-diaminobutyric acid acetyltransferase from Bordetella parapertussis. To be Published

Release Date

2008-07-15

Peptides

L-2,4-diaminobutyric acid acetyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

L-2,4-diaminobutyric acid acetyltransferase

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