SMTL ID : 3d4w.1

Crystal structure of Staphylococcal nuclease variant Delta+PHS A109R at cryogenic temperature

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: R.35, R.81 Ligands: MPD.2 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.35, A:R.81

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 11 residues within 4Å: Chain A: R.35, L.36, L.37, L.38, V.39, D.77, R.81, L.83, A.106, Y.109 Ligands: PO4.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:D.77, A:L.83, A:A.106, A:Y.109 Hydrogen bonds: A:D.77, A:R.81, A:Y.107 Water bridges: A:Y.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harms, M.J. et al., Arginine residues at internal positions in a protein are always charged. Proc.Natl.Acad.Sci.USA (2011)

Release Date

2009-01-06

Peptides

Thermonuclease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thermonuclease