SMTL ID : 3d53.1

2.2 A crystal structure of inorganic pyrophosphatase from Rickettsia prowazekii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-hexamer

Ligands

20 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: T.48, T.49 Chain B: M.50, H.137, F.138 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: R.44, M.46, Q.47 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: K.10, I.16, I.166 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: R.89, T.111, S.112 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain A: M.50, H.137, F.138 Chain B: T.48, T.49 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain B: R.89, T.111, S.112 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain B: K.10, I.16, I.166 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain B: R.44, M.46, Q.47 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain C: T.48, T.49 Chain F: H.137, F.138 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain C: R.89, T.111, S.112, K.113 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain C: R.44, M.46, Q.47 Ligand excluded by PLIP CL.14: 5 residues within 4Å: Chain D: T.48, T.49 Chain E: M.50, H.137, F.138 Ligand excluded by PLIP CL.15: 3 residues within 4Å: Chain D: R.44, M.46, Q.47 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain D: R.89, T.111, S.112 Ligand excluded by PLIP CL.17: 5 residues within 4Å: Chain D: M.50, H.137, F.138 Chain E: T.48, T.49 Ligand excluded by PLIP CL.18: 3 residues within 4Å: Chain E: R.44, M.46, Q.47 Ligand excluded by PLIP CL.19: 4 residues within 4Å: Chain E: N.14, R.89, T.111, S.112 Ligand excluded by PLIP CL.21: 5 residues within 4Å: Chain C: M.50, H.137, F.138 Chain F: T.48, T.49 Ligand excluded by PLIP CL.22: 3 residues within 4Å: Chain F: R.44, M.46, Q.47 Ligand excluded by PLIP CL.23: 3 residues within 4Å: Chain F: R.89, T.111, S.112 Ligand excluded by PLIP

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 5 residues within 4Å: Chain B: L.124, D.125, E.129, K.132, W.156 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.125, B:E.129 GOL.13: 1 residues within 4Å: Chain C: D.66 No protein-ligand interaction detected (PLIP) GOL.20: 6 residues within 4Å: Chain D: L.145 Chain E: K.133, V.136, H.137, E.140, H.141 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:H.137, E:H.137, E:E.140, E:E.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seattle Structural Genomics Center for Infectious Disease (SSGCID), 2.2 A crystal structure of inorganic pyrophosphatase from Rickettsia prowazekii. To be Published

Release Date

2008-05-27

Peptides

Inorganic pyrophosphatase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Inorganic pyrophosphatase

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