SMTL ID : 3d57.1

TR Variant D355R

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x 4HY: [4-(4-HYDROXY-3-IODO-PHENOXY)-3,5-DIIODO-PHENYL]-ACETIC ACID(Non-covalent)

4HY.1: 19 residues within 4Å: Chain A: F.75, F.78, I.81, I.82, A.85, M.116, M.119, R.122, A.123, R.126, T.135, L.136, N.137, G.150, L.152, I.159, H.241, M.248, F.261 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.82, A:M.119, A:A.123 Hydrogen bonds: A:N.137 Salt bridges: A:R.126 Halogen bonds: A:F.78, A:G.150 4HY.2: 16 residues within 4Å: Chain B: F.78, I.82, A.85, M.119, R.122, A.123, R.126, T.135, L.136, N.137, G.150, L.152, I.159, H.241, M.248, F.261 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:I.82, B:A.123 Hydrogen bonds: B:N.137 Salt bridges: B:R.126 Halogen bonds: B:F.78, B:G.150

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: N.170, H.218, H.219 Chain B: N.170, H.218, H.219 8 PLIP interactions: 4 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:H.218, B:H.219, A:H.218, A:H.219 Water bridges: B:N.170, A:N.170 Salt bridges: B:H.219, A:H.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jouravel, N. et al., Molecular basis for dimer formation of TRbeta variant D355R. Proteins (2008)

Release Date

2008-10-14

Peptides

Thyroid hormone receptor beta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Thyroid hormone receptor beta