SMTL ID : 3d5f.1 (2 other biounits)

Crystal Structure of PPAR-delta complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x L41: {4-[3-(4-acetyl-3-hydroxy-2-propylphenoxy)propoxy]phenoxy}acetic acid(Non-covalent)

L41.1: 19 residues within 4Å: Chain A: W.54, F.72, R.74, C.75, T.78, T.79, H.113, F.117, L.120, L.129, V.131, V.138, I.153, I.154, K.157, H.239, M.243, L.259, Y.263 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.72, A:R.74, A:T.78, A:F.117, A:L.120, A:L.129, A:V.131, A:V.138, A:I.153, A:I.154, A:K.157 Hydrogen bonds: A:T.79, A:Y.263 Water bridges: A:A.132 Salt bridges: A:H.113, A:H.239 pi-Stacking: A:H.239 L41.2: 19 residues within 4Å: Chain B: W.54, F.72, R.74, C.75, Q.76, T.78, T.79, H.113, F.117, L.120, V.131, V.138, I.153, I.154, K.157, H.239, M.243, L.259, Y.263 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:W.54, B:F.72, B:R.74, B:T.78, B:F.117, B:L.120, B:V.131, B:V.138, B:I.153, B:K.157 Hydrogen bonds: B:T.78, B:T.79 Salt bridges: B:H.113, B:H.239 pi-Stacking: B:H.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Iwashita, A. et al., PPAR-Delta Activation Contributes to Neuroprotectio Against Thapsigargin-Induced SH-SY5Y Cell Death. to be published

Release Date

2008-06-03

Peptides

Peroxisome proliferator-activated receptor delta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor delta

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