SMTL ID : 3d62.1

Development of Broad-Spectrum Halomethyl Ketone Inhibitors Against Coronavirus Main Protease 3CLpro

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x 959: benzyl (2-oxopropyl)carbamate(Covalent)

959.1: 10 residues within 4Å: Chain A: H.39, M.47, N.140, G.141, S.142, C.143, H.162, M.163, R.186, Q.187 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:M.163, A:Q.187 Hydrogen bonds: A:H.39, A:G.141, A:S.142 pi-Stacking: A:H.39 959.2: 10 residues within 4Å: Chain B: H.39, M.47, N.140, G.141, S.142, C.143, H.162, M.163, R.186, Q.187 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:M.163, B:Q.187 Hydrogen bonds: B:H.39, B:G.141, B:S.142 pi-Stacking: B:H.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bacha, U. et al., Development of broad-spectrum halomethyl ketone inhibitors against coronavirus main protease 3CL(pro). Chem.Biol.Drug Des. (2008)

Release Date

2008-07-01

Peptides

3C-like proteinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3C-like proteinase