SMTL ID : 3d64.1

Crystal structure of S-adenosyl-L-homocysteine hydrolase from Burkholderia pseudomallei

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 27 residues within 4Å: Chain A: D.254, N.255, C.259, G.284, G.286, D.287, V.288, T.306, E.307, I.308, D.309, C.312, A.339, T.340, G.341, N.342, V.345, I.363, G.364, H.365, L.406, N.408, H.415 Chain B: L.471, Q.475, K.488, Y.492 18 PLIP interactions: 13 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:G.286, A:D.287, A:V.288, A:T.306, A:I.308, A:D.309, A:N.342, A:N.408, A:N.408, B:Q.475, B:K.488, B:K.488, B:Y.492 Water bridges: A:N.255, A:N.255, A:G.289, A:H.365, B:Q.475 NAD.2: 27 residues within 4Å: Chain A: L.471, Q.475, K.488, Y.492 Chain B: D.254, N.255, C.259, G.284, G.286, D.287, V.288, T.306, E.307, I.308, D.309, C.312, A.339, T.340, G.341, N.342, V.345, I.363, G.364, H.365, L.406, N.408, H.415 19 PLIP interactions: 6 interactions with chain A, 13 interactions with chain B Hydrogen bonds: A:Q.475, A:K.488, A:K.488, A:Y.492, A:Y.492, B:D.287, B:V.288, B:I.308, B:D.309, B:N.342, B:H.365, B:N.408, B:N.408 Water bridges: A:Q.475, B:N.255, B:N.255, B:G.286, B:G.289 Hydrophobic interactions: B:V.288 NAD.3: 27 residues within 4Å: Chain C: D.254, N.255, C.259, G.284, G.286, D.287, V.288, T.306, E.307, I.308, D.309, C.312, A.339, T.340, G.341, N.342, V.345, I.363, G.364, H.365, L.406, N.408, H.415 Chain D: L.471, Q.475, K.488, Y.492 19 PLIP interactions: 13 interactions with chain C, 6 interactions with chain D Hydrogen bonds: C:G.286, C:D.287, C:V.288, C:I.308, C:D.309, C:N.342, C:H.365, C:N.408, C:N.408, D:Q.475, D:K.488, D:K.488, D:Y.492, D:Y.492 Water bridges: C:N.255, C:N.255, C:G.289, C:T.306, D:Q.475 NAD.4: 27 residues within 4Å: Chain C: L.471, Q.475, K.488, Y.492 Chain D: D.254, N.255, C.259, G.284, G.286, D.287, V.288, T.306, E.307, I.308, D.309, C.312, A.339, T.340, G.341, N.342, V.345, I.363, G.364, H.365, L.406, N.408, H.415 19 PLIP interactions: 14 interactions with chain D, 5 interactions with chain C Hydrophobic interactions: D:V.288 Hydrogen bonds: D:D.287, D:V.288, D:I.308, D:D.309, D:N.342, D:N.408, D:N.408, C:Q.475, C:K.488, C:K.488, C:Y.492 Water bridges: D:N.255, D:G.286, D:D.287, D:G.289, D:T.306, D:H.365, C:Q.475

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seattle Structural Genomics Center for Infectious Disease (SSGCID), Crystal structure of S-adenosyl-L-homocysteine hydrolase from Burkholderia pseudomallei. To be Published

Release Date

2008-06-03

Peptides

Adenosylhomocysteinase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Adenosylhomocysteinase

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