SMTL ID : 3d6k.1 (1 other biounit)

The crystal structure of a putative aminotransferase from Corynebacterium diphtheriae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: S.102, S.103, L.104, S.255, S.257 Chain B: Y.72 Ligands: EDO.3 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.103, A:L.104, A:S.255, A:S.257, A:S.257, B:Y.72 SO4.4: 7 residues within 4Å: Chain A: Y.72 Chain B: S.102, S.103, L.104, S.255, S.257 Ligands: EDO.6 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.103, B:S.103, B:L.104, B:S.255, B:S.257

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: N.246, P.247, N.248 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain B: N.246, P.247, N.248 Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 8 residues within 4Å: Chain A: M.107, Y.141, N.190, D.219, A.221, Y.222, K.258 Ligands: SO4.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.190, A:D.219, A:Y.222, A:K.258, A:K.258 Water bridges: A:S.103 EDO.6: 7 residues within 4Å: Chain B: Y.141, N.190, D.219, A.221, Y.222, K.258 Ligands: SO4.4 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.190, B:D.219, B:Y.222, B:Y.222 Water bridges: B:S.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of a putative aminotransferase from Corynebacterium diphtheriae. To be Published

Release Date

2008-07-15

Peptides

Putative aminotransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Putative aminotransferase

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