SMTL ID : 3d73.1 (2 other biounits)

Crystal structure of a pheromone binding protein mutant D35A, from Apis mellifera, at pH 7.0

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

homo-dimer

Ligands

3 x NBB: N-BUTYL-BENZENESULFONAMIDE(Non-covalent)

NBB.1: 10 residues within 4Å: Chain A: M.49, L.52, L.53, L.58, M.70, V.115, W.116, F.117, V.118, I.119 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.52, A:L.52, A:L.53, A:L.58, A:W.116, A:W.116, A:W.116, A:F.117, A:F.117, A:F.117 Hydrogen bonds: A:I.119 NBB.2: 10 residues within 4Å: Chain B: V.13, M.49, L.52, L.53, F.56, V.115, W.116, F.117, V.118 Ligands: NBB.3 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:V.13, B:L.52, B:L.53, B:W.116, B:W.116, B:F.117, B:F.117 Hydrogen bonds: B:W.116 pi-Stacking: B:F.56 NBB.3: 11 residues within 4Å: Chain B: W.4, P.6, V.9, L.12, L.58, M.70, L.73, L.74, P.75, F.117 Ligands: NBB.2 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:L.12, B:L.58, B:L.73, B:L.74, B:F.117 Hydrogen bonds: B:L.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pesenti, M.E. et al., Queen bee pheromone binding protein pH-induced domain swapping favors pheromone release. J.Mol.Biol. (2009)

Release Date

2009-05-26

Peptides

Pheromone-binding protein ASP1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pheromone-binding protein ASP1

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